RNA id: TU148221


Basic Information

Item Value
RNA id TU148221
length 842
lncRNA type intronic
GC content 0.45
exon number 1
gene id G118285
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 19456142 ~ 19456983 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGAACACGTACAGGATGGGATTGAGGAAACTGTTGGCGAAGGCAAGAGTAACAACAACACtaactgcttttttaaaaatctcGGTGTCGTGTCGATGGTGGTTTATCTCGAGCATTATGACAATGTGGTAGGGTAACCAGCAGACAAAGAAAGTGGCGATGATGGCAGACATGATTTTGAATGGTTTGTTAGATCTTGCCATCCGATTGTTCTTCAGTTTCCTGATGATGATAGTGTAGCAGAAGACAATCACCACAAAGGGAATCACAAATCCAAAGATGAATCTGCTGAAAGCAACACTTTCatgatttgcattttcataGTTGTTGTAGCACAAAGTTTTCCCTCGACTAGCTGTAATGTCCCTGAATATCAATGGCGGTATACTTAAAAGACAAGCGGCGACCCAGGCAAGGAAGGCTATCACAGAAGCCATCCGTGGTGTGCGGTAGTTCTGGGACCACACTGGGAACACAACAGTCACACAGCGGTCAATACTGATGATGACCAGGAGGAAGATGCTGCTGAACATGTTGAGGAACAGTATGAATGCGTTAAACTTGCACATTAACAATCCAAAGTACCAGTGCGAATCGCAGACAACATGCACAATGTAAAAGGGaaggaaaacacagaacaagAAGTCAGAGATGGCCAAGCTGAGGAACCAGGTGGTGTTCACAGTTCTCTTCATCTTGAAGCCAGTTATCCAGATCACCAAGCCATTTCCACAGAACCCCAGGagaaaaataatggaataaaGCACGGCGATCACATTTCTAAATGCAGAGCTGGCCGTTTCAGTACCGGCAGCGGTGCCAGTGGAAAGGGAAGTTGCGTTG

Function

GO: NA

KEGG:

id description
ko04062 Chemokine signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148164 lncRNA upstream 228709 19223374 ~ 19227433 (+) True AMCG00018732
TU148059 lncRNA upstream 547186 18906406 ~ 18908956 (+) False AMCG00018717
TU148025 lncRNA upstream 623899 18827597 ~ 18832243 (+) True AMCG00018712
TU147886 lncRNA upstream 725330 18466368 ~ 18730812 (+) True G118013
TU147918 lncRNA upstream 779916 18674274 ~ 18676226 (+) True G118043
TU148226 lncRNA downstream 10840 19467823 ~ 19473460 (+) True G118290
TU148227 lncRNA downstream 22708 19479691 ~ 19479956 (+) True G118291
TU148240 lncRNA downstream 119981 19576964 ~ 19579031 (+) True G118304
TU148377 lncRNA downstream 537143 19994126 ~ 19994329 (+) True G118410
TU148570 lncRNA downstream 822305 20279288 ~ 20299830 (+) True G118566
AMCG00018736 mRNA upstream 110384 19332490 ~ 19345758 (+) True AMCG00018736
AMCG00018739 mRNA upstream 128263 19326479 ~ 19327879 (+) True AMCG00018739
AMCG00018735 mRNA upstream 149402 19299948 ~ 19306740 (+) True AMCG00018735
AMCG00018734 mRNA upstream 160141 19289189 ~ 19296001 (+) True AMCG00018734
AMCG00018737 mRNA upstream 173176 19274909 ~ 19282966 (+) True AMCG00018737
AMCG00018743 mRNA downstream 149039 19606022 ~ 19612141 (+) True AMCG00018743
AMCG00018746 mRNA downstream 155642 19612625 ~ 19636734 (+) True AMCG00018746
AMCG00018745 mRNA downstream 219639 19676622 ~ 19677939 (+) True AMCG00018745
AMCG00018744 mRNA downstream 221788 19678771 ~ 19684562 (+) True AMCG00018744
AMCG00018754 mRNA downstream 230601 19687584 ~ 19701791 (+) True AMCG00018754
TU148213 other upstream 5514 19448626 ~ 19450628 (+) False AMCG00018740
TU147936 other upstream 734799 18719206 ~ 18721343 (+) True AMCG00018702
TU147849 other upstream 1473839 17981210 ~ 17982303 (+) False AMCG00018681
TU147848 other upstream 1474028 17981210 ~ 17982114 (+) False AMCG00018681
TU147595 other upstream 2386472 17068212 ~ 17069670 (+) True G117786
TU148369 other downstream 514156 19971139 ~ 19974730 (+) True AMCG00018762
TU148559 other downstream 802394 20259377 ~ 20260940 (+) True G118557
TU148611 other downstream 917013 20373996 ~ 20374812 (+) False AMCG00018781
TU148644 other downstream 1057177 20514160 ~ 20514491 (+) True G118623
TU148656 other downstream 1135753 20592736 ~ 20593016 (+) True G118635

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00058711 True 1324 mRNA 0.44 1 NC_007116.7 20589472 ~ 20590795 (+)