RNA id: TU148227


Basic Information

Item Value
RNA id TU148227
length 266
lncRNA type intronic
GC content 0.49
exon number 1
gene id G118291
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 19479691 ~ 19479956 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAACTGTAAAAACCTTGTCTTTTCCCAAGGTGTCCAGAATGTTCTGAGGCCCGAGGAGAAAGCATGGCCTACTCTTACCTTTGCCTTTCCAGTGGGCCTGAGAGGCAAATCCAATATGGCCACCGTACTTCCGGTTAAACTCTGCCATCAGCGCTTTGTAAGGGTTGCGGATCATCAGGATACCAGTATCGAATGCCTCAATTTCCTTCTTCCCGCTCTCATGGGTTTTAATGCAGATCGTCCTTCCACTCCTCCAgtgatctctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148226 lncRNA upstream 6231 19467823 ~ 19473460 (+) True G118290
TU148221 lncRNA upstream 22708 19456142 ~ 19456983 (+) True G118285
TU148164 lncRNA upstream 252258 19223374 ~ 19227433 (+) True AMCG00018732
TU148059 lncRNA upstream 570735 18906406 ~ 18908956 (+) False AMCG00018717
TU148025 lncRNA upstream 647448 18827597 ~ 18832243 (+) True AMCG00018712
TU148240 lncRNA downstream 97008 19576964 ~ 19579031 (+) True G118304
TU148377 lncRNA downstream 514170 19994126 ~ 19994329 (+) True G118410
TU148570 lncRNA downstream 799332 20279288 ~ 20299830 (+) True G118566
TU148577 lncRNA downstream 822714 20302670 ~ 20302958 (+) True G118572
TU148612 lncRNA downstream 892263 20372219 ~ 20374812 (+) True AMCG00018781
AMCG00018736 mRNA upstream 133933 19332490 ~ 19345758 (+) True AMCG00018736
AMCG00018739 mRNA upstream 151812 19326479 ~ 19327879 (+) True AMCG00018739
AMCG00018735 mRNA upstream 172951 19299948 ~ 19306740 (+) True AMCG00018735
AMCG00018734 mRNA upstream 183690 19289189 ~ 19296001 (+) True AMCG00018734
AMCG00018737 mRNA upstream 196725 19274909 ~ 19282966 (+) True AMCG00018737
AMCG00018743 mRNA downstream 126066 19606022 ~ 19612141 (+) True AMCG00018743
AMCG00018746 mRNA downstream 132669 19612625 ~ 19636734 (+) True AMCG00018746
AMCG00018745 mRNA downstream 196666 19676622 ~ 19677939 (+) True AMCG00018745
AMCG00018744 mRNA downstream 198815 19678771 ~ 19684562 (+) True AMCG00018744
AMCG00018754 mRNA downstream 207628 19687584 ~ 19701791 (+) True AMCG00018754
TU148213 other upstream 29063 19448626 ~ 19450628 (+) False AMCG00018740
TU147936 other upstream 758348 18719206 ~ 18721343 (+) True AMCG00018702
TU147849 other upstream 1497388 17981210 ~ 17982303 (+) False AMCG00018681
TU147848 other upstream 1497577 17981210 ~ 17982114 (+) False AMCG00018681
TU147595 other upstream 2410021 17068212 ~ 17069670 (+) True G117786
TU148369 other downstream 491183 19971139 ~ 19974730 (+) True AMCG00018762
TU148559 other downstream 779421 20259377 ~ 20260940 (+) True G118557
TU148611 other downstream 894040 20373996 ~ 20374812 (+) False AMCG00018781
TU148644 other downstream 1034204 20514160 ~ 20514491 (+) True G118623
TU148656 other downstream 1112780 20592736 ~ 20593016 (+) True G118635

Expression Profile