RNA id: TU148377


Basic Information

Item Value
RNA id TU148377
length 204
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G118410
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 19994126 ~ 19994329 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttcacactgactgtctctgcggattgtcctgcacacattcacacaacacagcctgaacaccggccagttattcatacaatattaataccatcggctgctacgatccgattattatcctagtttattttaactagtcaggcgctgcaccggtcctgtgaaatccaagtttttaatgcactcggatattaactgtatcagtcattg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148240 lncRNA upstream 415095 19576964 ~ 19579031 (+) True G118304
TU148227 lncRNA upstream 514170 19479691 ~ 19479956 (+) True G118291
TU148226 lncRNA upstream 520666 19467823 ~ 19473460 (+) True G118290
TU148221 lncRNA upstream 537143 19456142 ~ 19456983 (+) True G118285
TU148164 lncRNA upstream 766693 19223374 ~ 19227433 (+) True AMCG00018732
TU148570 lncRNA downstream 284959 20279288 ~ 20299830 (+) True G118566
TU148577 lncRNA downstream 308341 20302670 ~ 20302958 (+) True G118572
TU148612 lncRNA downstream 377890 20372219 ~ 20374812 (+) True AMCG00018781
TU148616 lncRNA downstream 382959 20377288 ~ 20381442 (+) True G118601
TU148629 lncRNA downstream 444631 20438960 ~ 20443229 (+) True G118608
AMCG00018762 mRNA upstream 19760 19973578 ~ 19974366 (+) False AMCG00018762
AMCG00018759 mRNA upstream 27347 19959738 ~ 19966779 (+) True AMCG00018759
AMCG00018758 mRNA upstream 104395 19874328 ~ 19889731 (+) True AMCG00018758
AMCG00018753 mRNA upstream 142335 19805838 ~ 19851791 (+) True AMCG00018753
AMCG00018752 mRNA upstream 222172 19751614 ~ 19771954 (+) True AMCG00018752
AMCG00018764 mRNA downstream 32623 20026952 ~ 20035662 (+) True AMCG00018764
AMCG00018763 mRNA downstream 63509 20057838 ~ 20083148 (+) True AMCG00018763
AMCG00018768 mRNA downstream 100796 20095125 ~ 20097742 (+) True AMCG00018768
AMCG00018769 mRNA downstream 104734 20099063 ~ 20111187 (+) True AMCG00018769
AMCG00018767 mRNA downstream 117574 20111903 ~ 20119142 (+) True AMCG00018767
TU148369 other upstream 19396 19971139 ~ 19974730 (+) True AMCG00018762
TU148213 other upstream 543498 19448626 ~ 19450628 (+) False AMCG00018740
TU147936 other upstream 1272783 18719206 ~ 18721343 (+) True AMCG00018702
TU147849 other upstream 2011823 17981210 ~ 17982303 (+) False AMCG00018681
TU147848 other upstream 2012012 17981210 ~ 17982114 (+) False AMCG00018681
TU148559 other downstream 265048 20259377 ~ 20260940 (+) True G118557
TU148611 other downstream 379667 20373996 ~ 20374812 (+) False AMCG00018781
TU148644 other downstream 519831 20514160 ~ 20514491 (+) True G118623
TU148656 other downstream 598407 20592736 ~ 20593016 (+) True G118635
TU148657 other downstream 599037 20593366 ~ 20594139 (+) True G118636

Expression Profile