RNA id: TU148577


Basic Information

Item Value
RNA id TU148577
length 289
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G118572
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20302670 ~ 20302958 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ggaggataGAAAACATCTTCAGGGTAACTCACACAGCATTACTTGCTGAACCAGGGGCTTGAACTCAAAATCTTAGCAACCCAACCAGAAATATGTGGCAGTGTTTAATGTATATACTGGCCCATCTAGTTTCAATCTGGCTTTGAAGAACACTTCCAATCATACCTTAATGGAGATGCCTATAGTCAGCAGATACACACTGACATTCTGCTTTCTACATTGATGCAAcagttgatttttttgttgctttttcttgTAACAGAATGTCTTGTGTAATCTGCAAATTCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148570 lncRNA upstream 2840 20279288 ~ 20299830 (+) True G118566
TU148377 lncRNA upstream 308341 19994126 ~ 19994329 (+) True G118410
TU148240 lncRNA upstream 723639 19576964 ~ 19579031 (+) True G118304
TU148227 lncRNA upstream 822714 19479691 ~ 19479956 (+) True G118291
TU148226 lncRNA upstream 829210 19467823 ~ 19473460 (+) True G118290
TU148612 lncRNA downstream 69261 20372219 ~ 20374812 (+) True AMCG00018781
TU148616 lncRNA downstream 74330 20377288 ~ 20381442 (+) True G118601
TU148629 lncRNA downstream 136002 20438960 ~ 20443229 (+) True G118608
TU148639 lncRNA downstream 187903 20490861 ~ 20491106 (+) True G118618
TU148641 lncRNA downstream 196716 20499674 ~ 20500210 (+) True G118620
AMCG00018772 mRNA upstream 95216 20202428 ~ 20207454 (+) True AMCG00018772
AMCG00018773 mRNA upstream 105566 20189590 ~ 20197104 (+) True AMCG00018773
AMCG00018770 mRNA upstream 150944 20121209 ~ 20151726 (+) True AMCG00018770
AMCG00018767 mRNA upstream 183528 20111903 ~ 20119142 (+) True AMCG00018767
AMCG00018769 mRNA upstream 191483 20099063 ~ 20111187 (+) True AMCG00018769
AMCG00018774 mRNA downstream 8200 20311158 ~ 20312556 (+) True AMCG00018774
AMCG00018775 mRNA downstream 19460 20322418 ~ 20348942 (+) True AMCG00018775
AMCG00018781 mRNA downstream 71079 20374037 ~ 20374747 (+) False AMCG00018781
AMCG00018784 mRNA downstream 80171 20383129 ~ 20398337 (+) True AMCG00018784
AMCG00018783 mRNA downstream 105115 20408073 ~ 20433655 (+) True AMCG00018783
TU148559 other upstream 41730 20259377 ~ 20260940 (+) True G118557
TU148369 other upstream 327940 19971139 ~ 19974730 (+) True AMCG00018762
TU148213 other upstream 852042 19448626 ~ 19450628 (+) False AMCG00018740
TU147936 other upstream 1581327 18719206 ~ 18721343 (+) True AMCG00018702
TU147849 other upstream 2320367 17981210 ~ 17982303 (+) False AMCG00018681
TU148611 other downstream 71038 20373996 ~ 20374812 (+) False AMCG00018781
TU148644 other downstream 211202 20514160 ~ 20514491 (+) True G118623
TU148656 other downstream 289778 20592736 ~ 20593016 (+) True G118635
TU148657 other downstream 290408 20593366 ~ 20594139 (+) True G118636
TU148663 other downstream 298998 20601956 ~ 20603315 (+) True AMCG00018792

Expression Profile