RNA id: TU148643


Basic Information

Item Value
RNA id TU148643
length 392
lncRNA type inter_gene
GC content 0.61
exon number 1
gene id G118622
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20504116 ~ 20504507 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGTGGGAATGTGTTAGGGAAGGACACTCACTTGGACACCAGGGAGAAAGCCTCTGCACAGATGGCAGGGCAGGGCACCAGGCGGATGGCGATGCGGCCGAGAGCGGCAGGGTAGTGCACCCGCATCACCGTCTCGAAGGCCGTGGTGATGGTGTTGACGTCCCCCTGCTTGCTGCTCTGGTCCCCGCTGCCAGTGTCCAGGATGTTCCCCCCATGCAGGACCAGGATGAGGACATGGATCTTGCAGGGCTGCAGAGATGGCTGGGAGGAGCCGTCCTGGGGAGCAGGTAGGAGGAAAGGAGGGCAACAGTCAGCCTGAGTTAATGCTTCACACTGTCAGCTGGAGGGCAACTCAGAGTCAAACTCATGGCAAACCCACATGGCCAGACCGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148642 lncRNA upstream 2683 20500950 ~ 20501433 (+) True G118621
TU148641 lncRNA upstream 3906 20499674 ~ 20500210 (+) True G118620
TU148639 lncRNA upstream 13010 20490861 ~ 20491106 (+) True G118618
TU148629 lncRNA upstream 60887 20438960 ~ 20443229 (+) True G118608
TU148616 lncRNA upstream 122674 20377288 ~ 20381442 (+) True G118601
TU148645 lncRNA downstream 12752 20517259 ~ 20517494 (+) True G118624
TU148646 lncRNA downstream 18931 20523438 ~ 20523721 (+) True G118625
TU148647 lncRNA downstream 32227 20536734 ~ 20576007 (+) True G118626
TU148651 lncRNA downstream 81121 20585628 ~ 20590502 (+) True G118630
TU148654 lncRNA downstream 86056 20590563 ~ 20591175 (+) True G118633
AMCG00018782 mRNA upstream 19187 20477126 ~ 20484929 (+) True AMCG00018782
AMCG00018789 mRNA upstream 40767 20457965 ~ 20463349 (+) True AMCG00018789
AMCG00018783 mRNA upstream 70461 20408073 ~ 20433655 (+) True AMCG00018783
AMCG00018784 mRNA upstream 105779 20383129 ~ 20398337 (+) True AMCG00018784
AMCG00018781 mRNA upstream 129369 20374037 ~ 20374747 (+) False AMCG00018781
AMCG00018792 mRNA downstream 97504 20602011 ~ 20603279 (+) False AMCG00018792
AMCG00018793 mRNA downstream 126496 20631003 ~ 20637704 (+) True AMCG00018793
AMCG00018791 mRNA downstream 137822 20642329 ~ 20645241 (+) True AMCG00018791
AMCG00018799 mRNA downstream 166329 20670836 ~ 20678821 (+) True AMCG00018799
AMCG00018800 mRNA downstream 174773 20679280 ~ 20695194 (+) True AMCG00018800
TU148611 other upstream 129304 20373996 ~ 20374812 (+) False AMCG00018781
TU148559 other upstream 243176 20259377 ~ 20260940 (+) True G118557
TU148369 other upstream 529386 19971139 ~ 19974730 (+) True AMCG00018762
TU148213 other upstream 1053488 19448626 ~ 19450628 (+) False AMCG00018740
TU147936 other upstream 1782773 18719206 ~ 18721343 (+) True AMCG00018702
TU148644 other downstream 9653 20514160 ~ 20514491 (+) True G118623
TU148656 other downstream 88229 20592736 ~ 20593016 (+) True G118635
TU148657 other downstream 88859 20593366 ~ 20594139 (+) True G118636
TU148663 other downstream 97449 20601956 ~ 20603315 (+) True AMCG00018792
TU148789 other downstream 251122 20755629 ~ 20756220 (+) False AMCG00018802

Expression Profile