RNA id: TU110527


Basic Information

Item Value
RNA id TU110527
length 1142
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G88562
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 30525746 ~ 30562800 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CATTTGGTAATgtagtcatttttatttaatgcacaCAAAATGTCCATCTGTAACATGTTCAGCATATCCAGATTACATTCTCAGTCTcttcaaaagcaaaaagcagATCCAAAAGTCTTCAGTCAAACATCATGTTGCAGCTCTAACCTCTTATCACCTCTGGACTGACGGGATTATGTAAAAAGTTAGTGCTGAGGGACATTTATGCGAGTTAAACATGGTGGGAGCAACAGACTAGACTACTGGGGTGGCTCAGCTTATTGGAGTTTTATTAAGCTTTACGGCACATTATAAACCTGATAGCTTACTTTGCAGAAGTTGTAATGTAGGATTCATTGGATTGAATCTGGTTAAGGGTTGCCAGGGTGGGTTTAAATTGTATAGGCCTGAATCCACCTAGCTGATCCTCTTCccaacacacatatatatagatatgttaTCCAAAacttataattataacaattatataattatataaattttGGTTAACAGCAATGTATAAACGAAACTGAAGTGAAGACACTCGCACAAAACGCTATTGGGTAGCATGTGAACCAGCCTTTACTACCCATTCAGGACACGAGGGGAGCCCCGCTCATCCTCAACAAAATCTCATTTATACAGTACAGGAGAGGCGAAATACTGTTCCCACACATTGACAAAGGCTATACCATATTGGGCACGATTCATAGGAGTTGGCATATTTTAGATTAGCAGCGGcttctaaaaaaaatgttaaatgaggCTCTTGTGTCAGAATACACACGCACCGCATGTagttaagtttaaaatacaatcgGACAAAATAAAAACGGGCAGGTGAAACGGCAGGAACTAAAAATGGCATTCAATTGGTATTCAATTGGCATTGGTAGTCCTAACCGGAGTGATCGTCTTTcaaaagcacacaaagcacattgaCCTCTTCTGTGACATGACAGACCTAAGCTAAGCAATTGGACATCATGAGGTGGACTGAAGAAGCAAACAGACCTCCCTTACTCAGACTAGCTCTGGAGACTGCGCTCGCTAGTTTAATATTACACGGTTTGTGTGTGGTTAACAAATGCACCATGATTACACTGggaaaaacatttcagtagtttaattttttttttttttttttttttttttttttttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110503 lncRNA downstream 100194 30425304 ~ 30425552 (-) True G88545
TU110368 lncRNA downstream 578206 29888445 ~ 29947540 (-) True G88435
TU110362 lncRNA downstream 684207 29838518 ~ 29841539 (-) True G88434
TU110254 lncRNA downstream 1244873 29279361 ~ 29280873 (-) True G88347
TU110135 lncRNA downstream 1694522 28830158 ~ 28831224 (-) True G88245
TU110628 lncRNA upstream 398903 30961703 ~ 30962096 (-) True G88643
TU110741 lncRNA upstream 1235952 31798752 ~ 31836239 (-) True G88736
TU110747 lncRNA upstream 1296609 31859409 ~ 31859833 (-) True G88742
TU110768 lncRNA upstream 1425974 31988774 ~ 31989050 (-) True G88762
TU110805 lncRNA upstream 1531902 32094702 ~ 32094939 (-) True G88795
AMCG00021809 mRNA downstream 6233 30519001 ~ 30519513 (-) True AMCG00021809
AMCG00021806 mRNA downstream 56104 30462011 ~ 30469642 (-) True AMCG00021806
AMCG00021807 mRNA downstream 80822 30433927 ~ 30444924 (-) True AMCG00021807
AMCG00021808 mRNA downstream 97245 30426116 ~ 30428501 (-) True AMCG00021808
AMCG00021805 mRNA downstream 129828 30394379 ~ 30395918 (-) True AMCG00021805
AMCG00021817 mRNA upstream 136549 30699349 ~ 30707723 (-) True AMCG00021817
AMCG00021816 mRNA upstream 146025 30708825 ~ 30719230 (-) True AMCG00021816
AMCG00021818 mRNA upstream 167855 30730655 ~ 30741775 (-) True AMCG00021818
AMCG00021819 mRNA upstream 204934 30767734 ~ 30768744 (-) True AMCG00021819
AMCG00021820 mRNA upstream 315188 30877988 ~ 30888588 (-) False AMCG00021820
TU110482 other downstream 101134 30337583 ~ 30424612 (-) True G88527
TU110330 other downstream 782938 29730077 ~ 29742808 (-) True G88405
TU110186 other downstream 1453986 29069201 ~ 29071760 (-) True G88288
TU110132 other downstream 1742465 28781802 ~ 28783281 (-) True G88242
TU109843 other downstream 3605902 26911474 ~ 26919844 (-) False AMCG00021723
TU110615 other upstream 315048 30877848 ~ 30888212 (-) True AMCG00021820
TU110664 other upstream 566783 31129583 ~ 31132185 (-) False AMCG00021830
TU110795 other upstream 1500585 32063385 ~ 32069464 (-) True AMCG00021849
TU111038 other upstream 3784188 34346988 ~ 34380295 (-) False G89004
TU111040 other upstream 3784188 34346988 ~ 34351125 (-) True G89004

Expression Profile