RNA id: TU1503


Basic Information

Item Value
RNA id TU1503
length 434
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id LOC122346132
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 5145342 ~ 5146126 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTGATCGAAGGAAGTTCAGCACTTCATCGATGAGCTCCTGAGGAGGAGACACCCGAAACTTGAGGTAAGATTCGGCATGTTCTTTTCCCTCGAAATGCCTCTGAGCCATTTGCCTCTTCCTGAGCTGCTTTtagtcaaaagcagcagacgaACACGAGACTAGACTGCCCCTGGAGTTATGCATTAATCCAACCTCCTTCTCTGCGTGCAACACCGTGACACGGGACGCGGGAGGCGGGAGGCGGGAACAGACAGTcaagaaataaacaataaaatgaaattCTTGCTGTGTGGAGGGCTGCACGGAGACACGTTTTCAGCTCAACGCAGactgtttttctctttgGATTCTGTCGTGGATCATTTGCTCTGGAGACAGAAACACTTCACCCCTCAACGTTTGAGAAACAAAAGGTCTTGTTAATGTTGGTCA

Function

GO:

id name namespace
GO:0016832 aldehyde-lyase activity molecular_function
GO:0004332 fructose-bisphosphate aldolase activity molecular_function

KEGG:

id description
ko00030 Pentose phosphate pathway
ko00710 Carbon fixation in photosynthetic organisms

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1430 lncRNA downstream 188385 4956378 ~ 4957056 (-) False mdh1b
TU1411 lncRNA downstream 207753 4935720 ~ 4937688 (-) True G978
TU1402 lncRNA downstream 214740 4929364 ~ 4930701 (-) True G973
XR_006251107.1 lncRNA downstream 282476 4861001 ~ 4862965 (-) True LOC122346181
TU1385 lncRNA downstream 396556 4747490 ~ 4748885 (-) True G959
TU1499 lncRNA upstream 4367 5150493 ~ 5151842 (-) True G1028
TU1618 lncRNA upstream 409364 5555490 ~ 5555750 (-) True G1114
TU1619 lncRNA upstream 410754 5556880 ~ 5557342 (-) True G1115
TU1620 lncRNA upstream 414492 5560618 ~ 5560855 (-) True G1116
TU1634 lncRNA upstream 415251 5561377 ~ 5566978 (-) True G1124
XM_043240720.1 mRNA downstream 69830 5038724 ~ 5075611 (-) True klf7a
XM_043240805.1 mRNA downstream 185231 4956119 ~ 4960210 (-) True mdh1b
XM_043240448.1 mRNA downstream 248541 4765299 ~ 4896900 (-) False pard3ba
XM_043240440.1 mRNA downstream 248541 4765299 ~ 4896900 (-) True pard3ba
XM_043240468.1 mRNA downstream 405981 4677795 ~ 4739460 (-) True nrp2a
XM_043241868.1 mRNA upstream 465782 5611908 ~ 5616115 (-) True mxa
XM_043236157.1 mRNA upstream 479584 5625710 ~ 5629067 (-) True LOC122342384
XM_043242075.1 mRNA upstream 500020 5646146 ~ 5655085 (-) True efnb2b
XM_043242159.1 mRNA upstream 510511 5656637 ~ 5661762 (-) True arglu1b
XM_043241616.1 mRNA upstream 600344 5746470 ~ 5766103 (-) False radil
TU1193 other downstream 846248 4298310 ~ 4299193 (-) True G820
TU1152 other downstream 1131154 4007840 ~ 4014287 (-) True G782
TU999 other downstream 2455977 2688765 ~ 2689464 (-) True G654
XR_006250784.1 other downstream 3540457 1594758 ~ 1604984 (-) False LOC122343438
XR_006252053.1 other downstream 4015804 1129499 ~ 1129637 (-) True LOC122353706
XR_006252050.1 other upstream 631445 5777571 ~ 5777657 (-) True LOC122353693
XR_006251180.1 other upstream 699950 5846076 ~ 5853244 (-) False LOC122346875
TU1845 other upstream 965337 6111463 ~ 6113523 (-) True G1270
XR_006251170.1 other upstream 1121537 6267663 ~ 6274751 (-) False si:ch211-14k19.8
XR_006251174.1 other upstream 1311925 6458051 ~ 6468254 (-) False gaa2

Expression Profile