RNA id: XM_043242088.1


Basic Information

Item Value
RNA id XM_043242088.1
length 3055
RNA type mRNA
GC content 0.36
exon number 3
gene id LOC122347076
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 6074411 ~ 6078273 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATTATTTAGAGCTTCGATCTAACTTTTTGAGAGAAATCTTTGAAgtctaaaaaataaagcattcacagattaatgtttaaatatcacaaaatgttATAGATATATCTCATTAATGAATCATCCTCATGTCATTGTCACCGGTAAGATCCTCATTCATCTTtggagcacaaattaagatatttccgatgaaatctgagagctttctgaccctgcatagacagcaacacaactaccACACAACTATAAGAAAATAGTGCACGACATCAGTGGTTCGACCAAAAAATGTTATGAAGCCATGACAATAATTTTGGTTTGCAAAGAAATCAatctcttctgtgtcagtcttTGCATGTTAATGAGAATATcatataaaatttcatttatcatttagtttttcttgGTTGCAATCTATAAACcgatcaaaatataaatatttaagtcGAAAAACATACCGACTTTTAGCTTAATCATACTTTCAAATACTattacactaaataaaaatggggGAAAGATTTTCTTCTACTTGCAAGAACGTAACTTTGATAAATATTGGATGTTGATTAATGATTGTGTCTCcagctgtttctttaaaagtagCGATGGCCTCAGCAGATCAATAGTGCAGACCTGCTCGTTGGTTAAAAATCAGACGCAGTGCAATGTTGTGGCTCGCCTGTGAAAGCCTAGTCATGCTGTGTGAACGCTGTCCAGAAGAGCAGTGCAGCTGCCCAGCCTTCACATGACACGATAAGAAGGAGCTGATTGCATTACCAGAGAACTTGATCCATGATCTTCATCGTGATGTTTCTTCTTCGTGCGCTGATGCTGTCGCTTCTCTTCGGTGCATCGGCCAAAGTTGTGCAGGATTTTCAGAATGAATGCGGCCAATTCTTTGCAAACAGGAGATCACCAACAATATTTCCTGAACCACAATACAGGCAGATCTGCCAAGctctaaataatgtttattattatgccACATTCTATGACACTGACAACAAGATCCCTGTGTACTCTGCCTACAAGTTTGAAGGACTAAAGGACTGCAAAAGAACAAACAGGTGGTACATTGAACCTCAACTTGACGACAAAAAAGAATCATCATCCATGAAATGTGAGAAAGATGTTAAAATACAACAACTTGGAGACCATCAAGCTCTTAATGGTGACTATGATAACTCTGGATACGACAAAGGTCATCTGGCACCAGTCTTCCAGGCACTGTCACAGAGCTGTGCTGATGCCACCTTCACTCTCACCAATGCTGCTCCACAAGACCGCTCTTTTAACCGAGGACAGTGGAAGAAACTAGAAAAAAGCATTGCGGAAGAACTGTCCGAGCAATGTCTATCAAAAAAATATTCGGTCTACATTGTGACAGGGGTGGTACCAGGTgcaagtcaaataaaaaatagagtaaaaGTGCCTAGTCACTTCTGGACCGCATACTGCTGCTTAGACAACAATAACAAATGTCAGATCTCAAGAGGGTTTATTGGAGAGAACAAGAATATTACTCCCAAAGACAAAACTGTGGGGGAATTAGAGAAAGATCTGACAACACTTTATAATGTTGGTTCATTTGAGTTGTTTGATAACTCTATAAAACTCCCACAGCAGAAACAAAGTGAACtctttcataataataaagcacCAGTGAGCTATTGTCTGAAAGAGAAACTTTATCAAATGTTTTCCTCGTTGTTATTGTGACTTCTggtttaattgtaattgttagcagagtcattaaaaaaactgaattcgGATTTCACAAAAACTGCCTAATGTAAGTGTTTTTCAAAGAAGAGAAATCAAGAAAAAATAGTGGATGCTGTACAGTCTTTGATAGACATTAATTCACACTTACCCAGGTTTAGAGTAAGAACCGAAGCTTtggagaaaaattttatgaTTAATTGCTATAGGAATTTGGGAAGCATCTCATAAAAATAAGGTGGCGTTGTCTGCTTACTGACTAAAAATATGCCCCGATCTGCTATACGGATACCTCGAATAGCACTTTCTCATATAAATATTGACAGTAGCTGCACGACATGGAGAAATAAATAGGAAGAAATATTGACACCCCTGCCTCACTCCTCTGGATAAACTAAACCTGGGTGAAATGCCATAATTTAATCAAAGCACttacattattgttttatttactcttCAAAAACATATCCACAAAACCAAATTTTACTAATGAATGAAACTGAAGTTCTAAAGAATCAAAAGCCTTTTGTAAGTCTAAGTAAAGAAGGAAGCGGTCCTCCTGAATCAATTCTGAATAGTCGAGTAAACCAATAATCAGTCTAGTCAGGGGGAGAGTCTCATTTTTGATGCTTTCTTCAAAAACCTTAAGTAAAAAAGGAGACAGTTCTTTAGAGAACTGTTTGTATAACTCTTGTTTTTAACCTACTAACTTCAGATAAGGACATTTCATTGTCACAAAAAATTCTGCCATCTCTTGTAACAGCCTTACAATTTTTAACAGTCTCTAGAAAAGTACaggctgcattttaaaataaagattactATAAAATTTAGCACAGAAAAAGTATTAGAACTCCCTCGTCCATCTATTTTTGTCTAGATCTAATGTAGACACCCTGTACCATATAAGTGtacatttaatctaatttagACTGCAGGTCAGCTTATCTGATTCAGAAAACAGCTCTGGGGATTTTAGAGGAAAGGATTGCAATTTTAGACACCACCTTAGTTCAAGTTTAGCTTAATGCATATACTGCTGAATGTTCCCAAATATTTACTAGTTTCAAACTTTATCAACTCCTACTGGCAACAAAATGAATCTGACACTAAAGCTCTTCTCCAGTACCGCTTAATCAGTAATGTAATATTCttcttaaaggtgctgtatgttttgagctttttctgtgtttattgaCAATATTACCGCAAGATAAATGTATCAGTCGTTGTTGGAAACATTGTATTGTACTAAAAGActaaaatgttgcttttcaCAGCAAAGTGACAGACACTTACAACACAATAGAGAGAAATGATAAACACTTTCTGCATCTGT

Function

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG:

id description
K15049 ENDOD1; endonuclease domain-containing 1 protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1825 lncRNA downstream 6797 6066311 ~ 6067614 (-) True G1257
TU1822 lncRNA downstream 11226 6062356 ~ 6063185 (-) True G1254
TU1809 lncRNA downstream 40412 6031896 ~ 6033999 (-) True G1248
TU1806 lncRNA downstream 53480 6020556 ~ 6020931 (-) True G1246
TU1797 lncRNA downstream 100349 5970390 ~ 5974062 (-) True G1240
TU1836 lncRNA upstream 10750 6089023 ~ 6089403 (-) True G1263
TU1847 lncRNA upstream 33190 6111463 ~ 6113523 (-) False G1270
TU1861 lncRNA upstream 135368 6213641 ~ 6214547 (-) True G1282
TU1867 lncRNA upstream 139971 6218244 ~ 6218589 (-) True G1288
TU1868 lncRNA upstream 145995 6224268 ~ 6225890 (-) False socs1b
XM_043242194.1 mRNA downstream 469 6071930 ~ 6073942 (-) True LOC122347124
XM_043242185.1 mRNA downstream 470 6071930 ~ 6073941 (-) False LOC122347124
XM_043241820.1 mRNA downstream 15146 6054892 ~ 6059265 (-) True ptcd1
XM_043241797.1 mRNA downstream 26602 6039555 ~ 6047809 (-) True zgc:112980
XM_043242231.1 mRNA downstream 94708 5974469 ~ 5979703 (-) True syngr3b
XM_043241809.1 mRNA upstream 143 6078416 ~ 6083178 (-) True fbxl18
XM_043242049.1 mRNA upstream 5926 6084199 ~ 6087762 (-) True actb1
XM_043241882.1 mRNA upstream 21703 6099976 ~ 6106980 (-) True abcg2b
XM_043241594.1 mRNA upstream 60350 6138623 ~ 6205146 (-) True grin2ab
XM_043242322.1 mRNA upstream 142331 6220604 ~ 6226114 (-) False socs1b
XR_006251180.1 other downstream 221167 5846076 ~ 5853244 (-) False LOC122346875
XR_006252050.1 other downstream 296754 5777571 ~ 5777657 (-) True LOC122353693
TU1193 other downstream 1775218 4298310 ~ 4299193 (-) True G820
TU1152 other downstream 2060124 4007840 ~ 4014287 (-) True G782
TU999 other downstream 3384947 2688765 ~ 2689464 (-) True G654
TU1845 other upstream 33190 6111463 ~ 6113523 (-) True G1270
XR_006251170.1 other upstream 189390 6267663 ~ 6274751 (-) False si:ch211-14k19.8
XR_006251174.1 other upstream 379778 6458051 ~ 6468254 (-) False gaa2
TU2105 other upstream 461255 6539528 ~ 6541383 (-) False LOC122342514
XR_006250919.1 other upstream 993316 7071589 ~ 7127407 (-) False trpc5a

Expression Profile