RNA id: XR_006251107.1


Basic Information

Item Value
RNA id XR_006251107.1
length 1289
lncRNA type intronic
GC content 0.45
exon number 2
gene id LOC122346181
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 4861001 ~ 4862965 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttTAGAGAGTGTGTGGTACACAGTTGTAGATGGTGAATGTGGATTGTTTTCATAGTTATGTGTGAACTCGTGTACACGTGTGGTTACAACTGAGCTGATGTTATGTGTGGTTTAGCGTTTACTTGGTTTTGGTTGTGTAAAAATGATCAccgaattttcagttttttggatcactgtccctttaaggctgCTTAGCGACCACCCGTATTGCCTTAGCAACTACACGGCAGCAGATTTGTGACTATTAAAGTGGCTAACGCTCGCTCGATGTTTGACTGCCGAAGCTGTATCaattcaaatgaatgcaaacgTTACACTTGCCATTCCTGAATCCATCATTGTGACTGCTCACTCAGGCTTGCCCTGGCTAACCTTCCCATAATGCTCCTCTCTGAAGCCAGACTGGAGGCAGATGTCCCTGTGTACACCTCAAACACTGCCGTgtcattacattacaaaaagtCCACTGTCAGCTGCACACACAATGCTCGTCTCGCTCATTTATCAATTAAATGATGCTGCGGACAAAGGAACCGTGCCCAATGTAGTTTAGTAGCCGCGCTAtagcgtgcgtgcgtgcgtgtgtgtgtgtgtgtgtgtgtgtgttagcactTGGGATTTGTTGTTGAAATGCAGCCGAGGCAATAGGGAAGTCAAAAAGGAGTCTTATTGAATCAGTGGTACTAAAGAGGAGGAAAGGCCTTCACGGGATCAGGGTTAACttaattagtgtgtgtgtgtgtgtctggggtGCAAACAGGGATAATGGCAGCATTTGAATGAGTTCATGCTTGGCCGGACTTCGCTTGACTTCTGAACAGTGTACGCTGCTAATCTGttcTCCAACAGTGTGTCTCTGAGGGTTAAACACATCATCCTGTACAAAAGCACAATGACAtttccccaaaacaaaacatctaagTCACTTTTATTCTGCTGTGGGGCGGGGCATAAGAGTGAGTGACAGGTGGTGACTGCTGAATAAAGACGGCTGGAGAGGGGCAGTGGGTCATTGCTCAGTTTGTGGGTCAAAGACATACATTAAAGCTCTGGGTGAATGTGAGGTTAAAGAGGTGGAGATGATACAGAGGGTGATTGGCAGCGTGACAGATGTCAGTCAGAGCTCAAAGGACCGCCCTCACACCTGCTGTACAGACATGAGAGAAAAGAGATGTTTGTTACAAGCTAAAATGCCAATTCAAACAAAGTAAATGTGCCATATGCGCTGTATACCgcatgcagttttaaaatgtaatgcagtaTGCAATGATAAACGTTTCAATCTGGA

Function

GO: NA

KEGG:

id description
ko04668 TNF signaling pathway
ko04657 IL-17 signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1385 lncRNA downstream 112116 4747490 ~ 4748885 (-) True G959
XR_006251101.1 lncRNA downstream 237080 4619246 ~ 4623921 (-) True LOC122346147
TU1304 lncRNA downstream 240135 4620340 ~ 4620866 (-) True G899
TU1292 lncRNA downstream 303503 4556369 ~ 4557498 (-) True G889
TU1289 lncRNA downstream 307729 4551569 ~ 4553272 (-) True G888
TU1402 lncRNA upstream 66399 4929364 ~ 4930701 (-) True G973
TU1411 lncRNA upstream 72755 4935720 ~ 4937688 (-) True G978
TU1430 lncRNA upstream 93413 4956378 ~ 4957056 (-) False mdh1b
XR_006251096.1 lncRNA upstream 282377 5145342 ~ 5145793 (-) False LOC122346132
TU1503 lncRNA upstream 282476 5145441 ~ 5146126 (-) True LOC122346132
XM_043240468.1 mRNA downstream 121541 4677795 ~ 4739460 (-) True nrp2a
XM_043240460.1 mRNA downstream 121542 4673689 ~ 4739459 (-) False nrp2a
XM_043240393.1 mRNA downstream 242374 4597080 ~ 4618627 (-) True fn1b
XM_043240404.1 mRNA downstream 242375 4597080 ~ 4618626 (-) False fn1b
XM_043240702.1 mRNA downstream 286581 4569834 ~ 4574420 (-) True mnx2b
XM_043240805.1 mRNA upstream 93154 4956119 ~ 4960210 (-) True mdh1b
XM_043240720.1 mRNA upstream 175759 5038724 ~ 5075611 (-) True klf7a
XM_043241868.1 mRNA upstream 748943 5611908 ~ 5616115 (-) True mxa
XM_043236157.1 mRNA upstream 762745 5625710 ~ 5629067 (-) True LOC122342384
XM_043242075.1 mRNA upstream 783181 5646146 ~ 5655085 (-) True efnb2b
TU1193 other downstream 561808 4298310 ~ 4299193 (-) True G820
TU1152 other downstream 846714 4007840 ~ 4014287 (-) True G782
TU999 other downstream 2171537 2688765 ~ 2689464 (-) True G654
XR_006250784.1 other downstream 3256017 1594758 ~ 1604984 (-) False LOC122343438
XR_006252053.1 other downstream 3731364 1129499 ~ 1129637 (-) True LOC122353706
XR_006252050.1 other upstream 914606 5777571 ~ 5777657 (-) True LOC122353693
XR_006251180.1 other upstream 983111 5846076 ~ 5853244 (-) False LOC122346875
TU1845 other upstream 1248498 6111463 ~ 6113523 (-) True G1270
XR_006251170.1 other upstream 1404698 6267663 ~ 6274751 (-) False si:ch211-14k19.8
XR_006251174.1 other upstream 1595086 6458051 ~ 6468254 (-) False gaa2

Expression Profile