RNA id: unassigned_transcript_87



Basic Information


Item Value
RNA id unassigned_transcript_87
length 73
RNA type tRNA
GC content 0.65
exon number 1
gene id trnar-ucg_58
representative True

Chromosome Information


Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 13284391 ~ 13284463 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ggcccagtggcctaatggataaggcatcagccttcggagctgaggattgtgggttcgagtcccatctgggtca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU4410 lncRNA downstream 77565 13205787 ~ 13206826 (-) True G3070
TU4359 lncRNA downstream 311379 12969093 ~ 12973012 (-) True smim18
TU4338 lncRNA downstream 396738 12886776 ~ 12887653 (-) True G3020
TU4173 lncRNA downstream 666349 12617768 ~ 12618042 (-) True G2891
TU4170 lncRNA downstream 689097 12592441 ~ 12595294 (-) True G2889
TU4414 lncRNA upstream 10234 13294697 ~ 13295015 (-) True G3074
TU4420 lncRNA upstream 18290 13302753 ~ 13313529 (-) True G3080
TU4437 lncRNA upstream 105612 13390075 ~ 13390345 (-) True G3093
TU4438 lncRNA upstream 106602 13391065 ~ 13391301 (-) True G3094
TU4439 lncRNA upstream 107092 13391555 ~ 13391885 (-) True G3095
XM_043243582.1 mRNA downstream 94629 13168159 ~ 13189762 (-) True pds5a
XM_043243590.1 mRNA downstream 94772 13168159 ~ 13189619 (-) False pds5a
XM_043243596.1 mRNA downstream 95012 13168159 ~ 13189379 (-) False pds5a
XM_043244004.1 mRNA downstream 124947 13156838 ~ 13159444 (-) False smim14
XM_043243982.1 mRNA downstream 125113 13154486 ~ 13159278 (-) True smim14
XM_043238283.1 mRNA upstream 114378 13398841 ~ 13422240 (-) False fam184b
XM_043238277.1 mRNA upstream 114378 13398841 ~ 13422238 (-) True fam184b
XM_043250221.1 mRNA upstream 149754 13434217 ~ 13451163 (-) True lcorl
XM_043250215.1 mRNA upstream 151434 13435897 ~ 13451163 (-) False lcorl
XM_043250226.1 mRNA upstream 156823 13441286 ~ 13451163 (-) False lcorl
unassigned_transcript_86 other downstream 245 13284074 ~ 13284146 (-) True trnar-ucg_57
unassigned_transcript_85 other downstream 1071 13283248 ~ 13283320 (-) True trnar-ucg_56
unassigned_transcript_84 other downstream 2046 13282273 ~ 13282345 (-) True trnar-ucg_55
unassigned_transcript_83 other downstream 2690 13281629 ~ 13281701 (-) True trnar-ucg_54
unassigned_transcript_82 other downstream 3015 13281304 ~ 13281376 (-) True trnar-ucg_53
unassigned_transcript_88 other upstream 252 13284715 ~ 13284787 (-) True trnar-ucg_59
unassigned_transcript_89 other upstream 1540 13286003 ~ 13286075 (-) True trnar-ucg_60
unassigned_transcript_90 other upstream 1857 13286320 ~ 13286392 (-) True trnar-ucg_61
unassigned_transcript_91 other upstream 2182 13286645 ~ 13286717 (-) True trnar-ucg_62
unassigned_transcript_92 other upstream 2690 13287153 ~ 13287225 (-) True trnar-ccg_12