RNA id: TU110119



Basic Information


Item Value
RNA id TU110119
length 875
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G74436
representative True

Chromosome Information


Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 2780642 ~ 2781516 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ACTCAAATACTGGAGGTGTACGGTTTCAGCAGGACCTTGGCCGAGCAACAGTGCTTTAGCTGTATGAATTCAACAAGCTACTAAATCCCTGGCCTGATTTTCACGattaaatattagttaaatCTGTACGAGTGATTGGAAGCGACTGGCTGAATTTTCCACCGCAAACAAACAGACGATATCGGGCGAAGGGGTGACGACAAACAACCGTTTTCTTCagataaaataacttttatttcacaaaaatatagaCTGAGGGATAATAAAACAGCTTATGTTGTTacgggaaaaaaatatattatgtacatttacCGCAGACGCCTTTGTGTTCACCTTCCCCTTTTTGACACGCAACAGTAGTCCAATCAAACGAGTACATCTGGATTCGACATCATGCGTGCAACGCTATAAAAAATGCAGAGAGGAAGCGGGAAATATACACAGTTTTACTCCAAGAACCGATCCTGCTTGAAGTATAAAGTGTCTCGGTCCTGCCAGTAACAGATGATTGCAGATCGATTGGCTTGTTTGCTTTGGTCCGCCTTTCTGGAAGCGTGCATCAGTTTCCTTCAGGGCCAGATTGAATTGCTCTGATGCAAGACTTGAGGGTCAGCGCGGAGCGACGGTAACACGGCCGTTAATGAGAGCgctctaaaaataaagaaatcaacGGCGAGGAGATATTTTTAAGGCGTTCGGAGGCTTTGCTGAAGCCGTTCTCAAATGATCACGACCCAAACGATACGGTTGTACATACCGTAATCACGAGACGCTAAATTGTATGgcataaaacttttttcattttgcgTGTCGTGCCAATGCatagaaaagtaaaaattttgcGTGTTGTGCCTAAGtttatagctatttttttt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU110123 lncRNA downstream 63305 2717097 ~ 2717337 (-) False LOC122352587
TU110035 lncRNA downstream 320490 2459812 ~ 2460152 (-) True G74367
TU110032 lncRNA downstream 325780 2453158 ~ 2454862 (-) True G74364
TU110013 lncRNA downstream 429976 2350461 ~ 2350666 (-) True G74345
TU110014 lncRNA downstream 430951 2349335 ~ 2349691 (-) True G74346
TU110143 lncRNA upstream 107929 2889445 ~ 2889948 (-) True G74455
TU110147 lncRNA upstream 267716 3049232 ~ 3049518 (-) True G74459
TU110262 lncRNA upstream 528271 3309787 ~ 3533716 (-) True G74533
TU110268 lncRNA upstream 669021 3450537 ~ 3454994 (-) True G74537
TU110304 lncRNA upstream 805919 3587435 ~ 3587894 (-) True G74551
XM_043250042.1 mRNA downstream 13447 2717282 ~ 2767195 (-) True LOC122352587
XM_043250128.1 mRNA downstream 417078 2360768 ~ 2363564 (-) True sigmar1
XM_043250121.1 mRNA downstream 420509 2351663 ~ 2360133 (-) False katnal2
XM_043250760.1 mRNA upstream 635 2782151 ~ 2787777 (-) True tmem267
XM_043250761.1 mRNA upstream 635 2782151 ~ 2787770 (-) False tmem267
XM_043249795.1 mRNA upstream 8037 2789553 ~ 2796224 (-) True rassf6
XM_043249796.1 mRNA upstream 15329 2796845 ~ 2808986 (-) True musk
XM_043250737.1 mRNA upstream 48461 2829977 ~ 2850728 (-) True lpar1
TU109952 other downstream 583331 2194115 ~ 2197311 (-) False LOC122352692
TU109557 other downstream 1292634 1484374 ~ 1488008 (-) False nrarpa
TU109558 other downstream 1292727 1483399 ~ 1487915 (-) True nrarpa
TU109556 other downstream 1292727 1484374 ~ 1487915 (-) False nrarpa
TU109541 other downstream 1306764 1466751 ~ 1473878 (-) False G74031
TU110254 other upstream 555872 3337388 ~ 3339929 (-) False LOC122353137
XR_006251926.1 other upstream 820096 3601612 ~ 3607788 (-) False hnrnpd
XR_006251921.1 other upstream 1124098 3905614 ~ 3912742 (-) False LOC122352741
XR_006251920.1 other upstream 1124098 3905614 ~ 3912742 (-) False LOC122352741
TU111527 other upstream 3757018 6538534 ~ 6540926 (-) False si:ch211-113d22.2

Expression Profile