RNA id: XM_043250526.1


Basic Information

Item Value
RNA id XM_043250526.1
length 1975
RNA type mRNA
GC content 0.43
exon number 6
gene id zgc:100918
representative False

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 16432527 ~ 16437594 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAACATGACGGGTGTTGAGTCAAGGGAGGGAGTGCTTGCGGCTCATTATTACAAACGGATGTGCTGAACTGTCCGTGACAACCATCCAAAAACACGCCACACGACCGAAAGAGAGCGTCCCGAGTCGATACGAGACGGCGGAGGTGTCGTGTtggcttgtttttgttgtatgaCAGCAGAAGATTGTTAAGCCGAAGCTGGGATTTCTCCTCAGAAAgcacaGTTTAGTCCACAAGGATGGCTTCTCGTAAAAAGGTGCTTCTGAAGGTGATCATTCTGGGGGATTCTGGGGTTGGGAAGACTTCTCTGATGAACCAATATGTCAACAAGAAGTTCAGCAATCAGTATAAAGCCACCATCGGCGCAGATTTTCTTACCAAGGAGGTGATGGTAGATGACAGGCTGGTGACAATGCAGATCTGGGACACTGCAGGACAGGAGCGCTTCCAGTCTTTGGGTGTGGCTTTTTAACGCGGGGCGGACTGCTGTGTGCTGGTGTATGACGTGACCGCACCGAACACCTTCAAAACCCTGGACAGCTGGAGGGATGAGTTCCTTATTCAGGCCAGCCCTCGAGACCCAGAGAACTTCCCCTTTGTAGTGCTTGGCAACAAAATCGACTTGGAGAACAGACAGGTGACAACAAAACGAGCCCAGGCCTGGTGTCAGAGCAAAAGCAATATCCCGTACTTTGAGACCAGCGCAAAAGAGGCCATCAACGTGGACCAGGCTTTCCAAACGATCGCCCGCAACGCTCTCAAACAGGAGTCTGAGGTGGAGACGTACGACTTCCCAGACCAGATTAAACTGAGAGATGACAGACCCGTGTCCTCTGGCGACAGCTGCAGCTGCTGAGATGGGACGTTTGGAGACCGAGGGGACCAGAGAGGCAGAGGAGAGCCAGCATGGGGCCGACCGAACCCCATGTGCAGAACATCCAGCATTCAGAAGAAAACACTTCCTTTCCAAACTTGTATGTAAAGAACTGTTAGGAATTTAAAGAAACTCCCTGCTACAGCATCACTTTTAATATAACTACCTTTAAGGATATTATTTCTATGAGAAAAAGATGAAACGTAATagatatttctattatttacaagtgattttttctttttgcctcttgtttgtttattccttcATCCACGCAGATCGTAGTCTTTCAGACTTGTCTCCTGCTTATATATCTCTGTCTgtgccttttaattttttttctttttttaggatGTAGAAGCAGTCACACTTCCTTTAAATTCCTTTATTTTGCCAAATCCTTTAATATGCTAAATGTAATCGATTCTTTATCtaaaaactacacacacacacacgcactcggAATAAACAGCCCAACATGACACAATATCAAAATCTTCAGTGAAATATAAGAGCTGCCGAGACcagaaagaaatattaaaagtttgTGCCTAAGGACGTCTTCTGTGTGCAGGAAGGCTGCTGGTGTCAAATGAACGTGTGAGCTCACAAATTAAGTGCAATCATTTTAACCATGCGGCATGATTCCTTTCGCTTCGAGCGAAAGCACTTCCCCAGTTTTAATGTATGAATGTAAGATTAATCATTTCTGTCTTGACCTCATGCTGTTTAATTACTCggtttacagtttatttttatgtttctgtgttctTGTAGTAGACATTTCTAACGGGCTCATCTCATTGACCAAATTATGGGTATGACGTAGGTCAAATAAAGGCACAAAATGTGAAGGAAAGCTGAAATTGAAGAGTGGGTCCTGACAACCCTTGAAtccatgtgattttttttttttaagtctttatTTCTGTCAACCAGTATTGTAAATGATTTTCATCGAAAACTTAGTGATGTCTGCCAATAGAAACACATCTGTCTCTCTTTTATAAAACAACTACCTTTCCCTGAACACCGTTAAATCATCTCTCGGTATTGTTTTATCAACAATGCTCCATTAATAAATCTTTATTCAAATGACAAA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115407 lncRNA downstream 37684 16394214 ~ 16395645 (-) True G78010
TU115372 lncRNA downstream 53778 16374220 ~ 16379551 (-) True G77980
TU115371 lncRNA downstream 80281 16351397 ~ 16353048 (-) True G77979
TU115318 lncRNA downstream 181136 16245655 ~ 16252193 (-) True G77947
XR_006251950.1 lncRNA upstream 58383 16495977 ~ 16497273 (-) False LOC122353043
XR_006251951.1 lncRNA upstream 58383 16495977 ~ 16497273 (-) True LOC122353043
XM_043250525.1 mRNA downstream 1867 16416912 ~ 16431462 (-) False LOC122352830
XM_043250524.1 mRNA downstream 1867 16416912 ~ 16431462 (-) True LOC122352830
XM_043250084.1 mRNA downstream 31795 16398853 ~ 16401534 (-) True stc1l
XM_043250158.1 mRNA downstream 87506 16342029 ~ 16345823 (-) True march5l
XM_043251163.1 mRNA downstream 149569 16256279 ~ 16283760 (-) True tcf7l1a
XM_043249861.1 mRNA upstream 726 16438320 ~ 16442017 (-) True LOC122352454
unassigned_transcript_1474 other downstream 314307 16118952 ~ 16119022 (-) True trnag-gcc_66
unassigned_transcript_1473 other downstream 314473 16118786 ~ 16118856 (-) True trnag-gcc_65
XR_006251960.1 other downstream 376022 16030527 ~ 16057307 (-) False cabp1b
TU115119 other downstream 415559 16016671 ~ 16017770 (-) False LOC122352931
TU115089 other downstream 536231 15893683 ~ 15897098 (-) False npffr1l1

Expression Profile