RNA id: XM_043250878.1


Basic Information

Item Value
RNA id XM_043250878.1
length 4025
RNA type mRNA
GC content 0.48
exon number 20
gene id bmp1b
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 15872490 ~ 15890490 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAGTCCACTGACCTCCGATCTGTGATGCTGCTTAAAGCTGGCCCGAGTCCCGGGTATGTGAGCGAATCACTGGACTAGAATAAAGAAACTGAATAGAGCAAAGCCTCGCTTCTCTAAACCCGCCTTCCCGAGAGCTCCCATTTTCCCAAGTCCTTCCAAACTCCCACCGCGACCCGCAGCTCTCCGCCGGCTCCAGGTTCCCATCTACATCCGCACTCATTCCCGTCATGAAATCCCCGTGGACATGTTTGCTTGCGCTAAATCTTCTGCTTTTATTAACGATCGCTTTGAAAGTGGATTCAAACTATCACAAAAGGCTTGGGGACGGTGATGAAGTTGACTACAAGGACCCGTGCAAAGCTGCCGCTTTTCTGGGCGACATAGCCTTAGACGAAGAAGACTTGCTCCTGCTTAAAGCCAGATACATGGACATTAAGAAGAACTTCTCTATACCTGATTCAGCAAACAGATCCTCAGCTAATGGCGATGCAAAGGACGACCCAGTTTTGGCCGGTCAAAGGCTCCTACGCGGACGGAGAGCAGCCACCGCCAGACCTGAGAGAGTTTGGCCGGATGGCATAATACCCTATGTTATTAGCAGCAACTTCAGCGGCAGCCAGCGAGCCATTTTCAAGCAGGCCATGCGTCATTGGGAAAAACACACTTGTGTGACATTCACTGAAAGAAGCACAGAAGAGAGCTACATCGTTTTTACCATCCGGCCTTGTGGgtgctGCTCATTTGTCGGGCGGAGAGGTGGAGGTCCCCAGGCTATATCTATCGGGAAGAACTGTGACAAGTTTGGCATCGTGGTGCATGAACTCGGTCATGTCATTGGATTCTGGCATGAGCACACACGACCCGACCGGGACGAGCATGTCGATATATTTAGAGAGAACATCCAGCCAGGTCAGGAGTATAATTTCATAAAGATGGAGCCAGATGACGTGGATTCTCTTGGAGAGGTTTACGACTTTGACAGTATCATGCATTACGCCAGAAACACCTTTTCCAGGGGCATCTATCTTGATACCATGCTGCCAAAGTATGAAGTTGATGGAGTCCGACCTCCCATCGGGCAGCGAACGAGGCTGAGCAAAGGGGACATCGCTCAAGCTAGAAAATTATACAAGTGTCCAAGATGTGGCGAGAGCCTTCAGGACAGCACTGGAAACTTCTCCTCCCCTGGGTTCCCTAATGGATATGCTGCATATCTTCACTGTATATGGAGGATATCGGTCACGCCTGGGGAGAAGATCATTCTTAACTTTACTTCAATGGATCTGTACAGAAGTCACTTGTGCTGGTACGACCACGTGGAGGTCCGTGACGGATACTGGAGAAATGCTCCTTTGAAAGGCCGTTTTTGTGGAGACCAGCTACCCGAGGCCATCGTGTCCACCGACAGTCGACTGTGGATTGaattcagcagcagcagtaatTGGGTTGGGAAAGGCTTCTCTGCTGTCTATGAAGCTATTTGTGGAGGTGAAGTGAGACGAGACAGTGGACAGATCGAGTCACCCAATTATCCTGATGATTATCGGCCTAATAAAATGTGCACATGGAAGATCATCGTGCCCCAGGGGTTTCATGTGGGCCTCGTCTTCCAGTCATTTGAGatcGAAAAACATGACAACTGTGCGTACGACTACCTGGAACTGCGAGACGGCGATTCTGAAAACAGCCCGCTACTGGGCCGCTTCTGCGGCTACGAAAAACCAGACGATGTCAAGAGCAGCTCCAACCAGCTGTGGATGAAGTTCGTATCTGACGGCTCCGTGAACAAAGCTGGGTTTGCGGCTAATTTCTTCAAAGAGATTGACGAATGCTCCAGGCCTGATAACGGTCACTGTGAGCAGCGCTGTGTGAACACCCTGGGCAGCTACCACTGCGCCTGCGACCCTGGATACGAGCTCGCTGCCGACCGCCGGAGCTGTGCAGCAGCTGCCTGTGGTGGATTCATCTCCAAACTCAATGGCTCCTTCACTAGTCCAGGATGGCCTCAGGAATACCCTCCTAACAAAAACTGCGTGTGGCAGCTCATTGCCCCGGTGCAGTATCGCATCACTCTGCTTTTTGATGCCTTTGAGATCGAAGGGAACGATGTATGTAAATATGATTACGTCGAGGTACACAGCGGTCTGTCCACAGATGCAAAGCTTCACGGGAAATTCTGTGGCACAGAGAAACCAGAGGCGATCACGTCCCAACTCAACAGCATTCGCGTTGAGTTCAAATCAGACAACACCGTGTCCAAGAGAGGCTTCAAAGCTCAGTTCTTTTCTGACATGGACGAATGTTCTAGGGAGAATGGAGGTTGCCAGCATGAGTGCGTGAACACGTTTGGGAGCTACAGCTGTCAGTGTCGCAGCGGCTTTGTGCTGCACAGCAATAAACATGACTGCAAAGAAGTGGGCTGCGATCAGGCCATTACCAGTGTTTCTGGAATCATCACAAGTCCTAACTGGCCAGATAAATACCCCAGCAAGAAGGCCTGCACATGGACCCTATCCACCACCCCAGGCCATCGCATTAAACTGGCTTTTGAGGAGATTGACATGGAAGCTCATGAAGAGTGTGCTTACGACCACCTGGAGATATATGATGGCCCAAATGGCAGAGTAACCAGTTTGGGTCGCTTCTGTGGGAGTAAAAAGCCATCGCCTGTCATTTCCAGCGGCAATAGCATGTTCCTGCGCTTCTTCTCGGATAACTCTGTGCAGAAGAGGGGTTTTAAGGCCTCTCATTCAGCAGAGTGCGGCGGTAGTCTGAAGGCAGATATAAAGACCAAGGATCTGTATTCCCACGCACAGTTTGGTGACAATAACTATCCCGGGGCTTCCGACTGCCAGTGGGTGATCTCAGCGGAGAAGGGCTACGGGGTGGAACTCATCTTCCACATATTTGAGACCGAGGAGGAAGCTGACTGCGGTTATGATTATGTGGAGTTGTTTGATGGCGCTGATGTCAAAGCGCCCAGGCTGGGGCGTTACTGTGGGTCTGGGCCGCCAGAGGAGATCTACTCAGCCGGTGATGCCATTGTCATCAAATTTCACTCAGATGACACCATCAACAAGAAAGGTTTCCACGTTCGGTACACAAGCACCAAGTTTCAGGACACCTTGCACTCTAGTAAGTGAGTTCATCGTGCCAGAAGCGCTCTGGAGAACATATCAGCCAGGGGGCTCTAATAACTCCTGCGGACCTGTGTTAGTGATGCCACCCGAGGCCCTGTGTTCCCTCCCCTCCAGACTGCAAAGAAGAAGATATAGTGGTACCAAACCCCCTTCAAAAAGCTGGGAGGACAAGCTTGATGCAGGGATATGGCAACATAATTTGTTTTGACGTACTTCAAAGGATCCATTAAACTCTAAAGGAACATCTGAGTGGCATATAATATCCGTATGAAGAGCTTTGCTGACTGAAAGTCAAGGAGGAAGGATAAATTAGATTCCCTGATGTCCCTGATGCACTTTTGCCTCCTAGAGATCTCTTCAGTTCCTCAAAGGCTAGAATCTTTTAGATGATTATtttcttgaaatgaaataatgaaatgcacAAATCATAATTCTTTATTGCCACACCTCTAGATGGTGGTATTGAGTTTggaaatatctaaaatatcatTCAGTGGTAATTACAAGGTTTTGTAAAAAGCAATTTTAGCACTATTTGTTACATGAGAGTTTTATCGAACGTTGTATGATTATTTAGGCTACTAGACTTAAATTATATGGCATTAAATTGTCCACCTGAAGCAATGAGCTGTAAGATAAAATTGTTAATGCAACTAATAAACATGTGAGAGGACGTTTACTTCTTTGTACTTTTGACTTTGTGTATAAAGACACTATGACTGAGTGTATGAGCACACAGAACAAACTATCGGAAATCTTGGTCGTTTGAAACTACGTTTTGCCCATAATGATGGTAGTCCTGTTTGGTTGTTTAATTTtgaagttgtattttttttttttatcctttttaaataaattttagttgacgtgcatgatttatttaca

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005509 calcium ion binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K13046 tok; tolkin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251891.1 lncRNA downstream 29953 15840351 ~ 15842537 (-) True LOC122352598
XR_006251904.1 lncRNA downstream 32424 15839513 ~ 15840066 (-) True LOC122352641
XR_006251889.1 lncRNA downstream 40564 15831207 ~ 15831926 (-) True LOC122352573
XR_006251906.1 lncRNA downstream 44934 15827084 ~ 15827556 (-) True LOC122352661
TU114936 lncRNA downstream 224627 15644403 ~ 15647863 (-) True G77715
XR_006251965.1 lncRNA upstream 12397 15902887 ~ 15912782 (-) True LOC122353197
XR_006251966.1 lncRNA upstream 24558 15915048 ~ 15917942 (-) True LOC122353198
TU115104 lncRNA upstream 30431 15920921 ~ 15921360 (-) True G77827
TU115107 lncRNA upstream 36696 15927186 ~ 15927498 (-) True G77830
TU115108 lncRNA upstream 37602 15928092 ~ 15928317 (-) True G77831
XM_043250587.1 mRNA downstream 7960 15862177 ~ 15864530 (-) True pcna
XM_043249875.1 mRNA downstream 22498 15847789 ~ 15849992 (-) True LOC122352473
XM_043251162.1 mRNA downstream 34110 15835096 ~ 15838380 (-) True LOC122353200
XM_043251210.1 mRNA downstream 50503 15820992 ~ 15821987 (-) True LOC122353239
XM_043250956.1 mRNA downstream 63433 15805107 ~ 15809057 (-) True LOC122353102
XM_043251156.1 mRNA upstream 2154 15892644 ~ 15897232 (-) True npffr1l1
XM_043250490.1 mRNA upstream 41465 15931955 ~ 15958445 (-) False aak1b
XM_043250489.1 mRNA upstream 41465 15931955 ~ 15958445 (-) False aak1b
XM_043250488.1 mRNA upstream 41465 15931955 ~ 15958445 (-) False aak1b
XM_043250487.1 mRNA upstream 41465 15931955 ~ 15958445 (-) False aak1b
TU114910 other downstream 514258 15357685 ~ 15358232 (-) True G77702
XR_006251922.1 other downstream 582818 15229969 ~ 15289672 (-) False LOC122352744
TU114878 other downstream 764738 15107137 ~ 15107752 (-) True G77671
XR_006251888.1 other downstream 1282591 14569361 ~ 14589899 (-) False vwa3a
TU114673 other downstream 1387220 14484817 ~ 14485270 (-) False im:6904045
TU115089 other upstream 3193 15893683 ~ 15897098 (-) False npffr1l1
TU115119 other upstream 126181 16016671 ~ 16017770 (-) False LOC122352931
XR_006251960.1 other upstream 140037 16030527 ~ 16057307 (-) False cabp1b
unassigned_transcript_1473 other upstream 228296 16118786 ~ 16118856 (-) True trnag-gcc_65
unassigned_transcript_1474 other upstream 228462 16118952 ~ 16119022 (-) True trnag-gcc_66

Expression Profile