RNA id: TU115433


Basic Information

Item Value
RNA id TU115433
length 383
RNA type TUCP
GC content 0.51
exon number 4
gene id LOC122353551
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 63006 ~ 65148 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAGACTCTTATCTCCCACAATGCcccgctgtctctctctcttccggTTGTCGTGCGCTTCGTGTGGCAGCAGACAGTGATCAGAAATGGCCAAGTCGAAGAACCATACCACACACAACCAGTctcgTAAGTGGCACAGGAACGGCATCAAGAAGCCCAGGTCTCATCGCTACGAGTCTCTCAAAGGGgTGGACCCTAAGTTCCTGAGGAACATGCGCTTTGCCAAGAAACACAACAAGAAGGGCATGAAGACCATCGCCAAGAAAGAGGCGCCCAAATAGATGAGGAAAGACCCCAGACGGTCAACGGTGTACAGATGTTCTCCAGAAGGACTTTATACCATCCACAATAAAGCCATGCTTTGACAAACGGTGTGTCTGTGTC

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0009987 cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0005840 ribosome cellular_component
GO:0019843 rRNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03010 Ribosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115455 lncRNA downstream 95602 160750 ~ 303218 (+) False G78038
TU115456 lncRNA downstream 97314 162462 ~ 163750 (+) True G78038
TU115467 lncRNA downstream 104317 169465 ~ 254515 (+) True G78048
TU115471 lncRNA downstream 106237 171385 ~ 174473 (+) True G78052
TU115462 lncRNA downstream 114414 179562 ~ 321984 (+) True G78043
XM_043251980.1 mRNA downstream 4497 69645 ~ 116501 (+) True LOC122354020
XM_043251863.1 mRNA downstream 125758 190906 ~ 192857 (+) True LOC122353953
XM_043251865.1 mRNA downstream 215532 280680 ~ 281562 (+) True LOC122353958
XM_043252499.1 mRNA downstream 283432 348580 ~ 350442 (+) False LOC122354326
XM_043252190.1 mRNA downstream 286807 351955 ~ 365169 (+) True LOC122354142
TU115474 other downstream 267921 333069 ~ 334396 (+) True G78055
TU115515 other downstream 283369 348517 ~ 350439 (+) True LOC122354326
TU115525 other downstream 344185 409333 ~ 410684 (+) True G78083
TU115526 other downstream 346891 412039 ~ 412753 (+) True G78084
TU115545 other downstream 522836 587984 ~ 595328 (+) False iars1

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU279103 False 656 lncRNA 0.42 4 CI01000057 5823728 ~ 5827840 (+)