RNA id: TU115461


Basic Information

Item Value
RNA id TU115461
length 4819
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id LOC122354311
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 367803 ~ 373639 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATTTAACAGCAGGTTTAATATAAGAGTCCCAGGAGCACCAGAGCAATCTGTGGCACCGTTTATTGACAGAAGATGCACAATAttcatgaacaaaataaaaacatcatctGTGATTTCActgataaatgcattaatgttagACTTGACTAAATGAGAGAATTGGCACTAGCAGCTACAAAAACTAATTGTTACATTggcaacaaagaaaaaaaatgtaaattaattcaataaccaccaaaaaagcaatttaatgAAGCACAAGTACGTTATGATAAGTTTTGATGATACGTGGTATTGTTGAGAGCATGGGCTAAGAAAGTCTTCTATCATCTAGAAACAACTCCATTACACTCAAAGGTTTAttgtatatacaatattaaattagtattttgaTGAGATTCATTTTCTACAGACCTCGAATTACTGCCTCAGAGGATAGAAGTCAAAGAAATTAAAGATCATCTTAACCttttaaataagatttccaAATCTACAGTCAAACAATATTAGCTGACAACGAGTCCGAAGCCCAGTAACgattctcaaaaataaaattaagacaCCATAtcaaaatcacataaaatataatcaaactaTGTAATCAGATTCATAACGAAGCTGCTGACGTGTGTTCAGATCACAGATGTTCTCACTCTGAGGAACATtacttcttctccttcttcttgtcctaaaaaacaaacaaaaagagttAGATGAAACAAAACCGATATAAACGACGGTTGTTACATATATATGATGTTTCAAATAAAGACCTTCTCGTTCATGGAGAGGATGATCACAAGCTTTCTGAAGATGGTCACGAAGTCCAGGAAGAGGTCAACACAAtgccttcaaaaacaaacattttcgtTATGCAGCACTTGTGGAGAgatgattaaaaacacaacacgTTACATACATAccttcattagagtattagtagtgtGTCGCTGACACTATTTAATCTCACCAGACAGACCGAGTATAGGACACTTGAAGTATGAGAACATTCTACTGATGCATTCATTAGAACGCCTTAAGAACTCTAAGAGCACACAACGCTTCACAGGAAGTGTTCCCTTAACGTTTTTAAAAGCACAGTAACCTCTTTTCCTCACCAGATGTAATCTTTGTCTCCCATTTCCGCCTTCTCAATAATCAGCTGCGTGTCAAACAGCACAAAGCCACACATGATGACCAGACCCAGATACACGTGagcctgaaacacacaacacaccgGTCACACACGCTTTCACACAACCACCTGCTTCACACGGTCTCCTCACGTACCTTGAAGACTATCGCCGAGGCGAAGAACATGTTGAGGACGGAGACGAGCAGAAGAACGGTCAGCCCTGACATCAGAGTGCCCCCCAGGAAGAGATAACTTCTGCGCTGGGCATAGAGAGCGCTCAAGGTGAAGCAGGTGAAGATGAGCGAGGTGCCCAGGAAAGCAGTCAGGATGATGCTACAAAGACAAAGACAATCAGTGGTTGAACACGATGTGCAGCTCCACGGAGTCACAGCGTCAgcaacaagaaaacaaaccgGTTTCAGTCAATCCCGTCACTGTCTCAGCGAccgatgctctgcagtgaatgggtgccgtcagaacgagagcctGGAcggctgatgaaaacatcacaatccTCCACAGCACGGAAGACGAAACTGATCCAGCAGCAAGACGTTTCCTTTCGCTGAAAAAGCCACATAGCTTTAAATCATTGctatgttttcatcagctgtcctgacggcacccattcactgcagagcaagcaatctcttcaaatctgttcacaTGAAGAACAAAAGGGTGTAGATGTACACATCTTCATCAAATGGTGCTTTCAGGGTTAATGCTTGAACAATCATCTCGAGGTAGAGACCCTGCGCTCTGGGGATGTTACCTCGGGTTGACGCTAATGACGTAATCCATGAGCGGGCCGAGTCCCAGACCTGCGTGAGGCACAGACGAACACGTCTCAGTATGATCTGAACACACGGTCTGGGAGAAGAAGCGGTTCAGAACCTCACCTGTGAAGAAAGCAAAGCCAGCGAGGATGGCCAGCCTCTTCTTCTCTGTCTGAGGGCTGTGGGGGGTCATAGCAAGCCAGCCCATCATAGCCAGCGATCCCAGCATGGTCAGCCCTCCCTGAAAGACATCACCATGACGACACGTCAGACAAGCCCCTCCCACAACCGCTGACGGACAGCGCCGTGTTTATCTTCAAGCCAGATCGTTTAAAATAAGGCCTTATGATTTCCATGATGTGGACATAAGAATCTagtcataaaaacaaatgaatgcttgccaaaaaataaatagtttggaCAACcgaattaaatcaaataatttgtAGAATTTGAtgatgattaaattaaaatgctttacgTCTTCATTTGACTTTAAATAAAGAGCCTAGAAAGCCACAACTTATCAACTGGTCTTAGTACAGGAtacaactacagaagagtcagggtttaaacaggaaaaacatcTAAACTCTTTGGTCACTTCTGAaagcgatgctactggtctaattggattcagtgatctatgctaagctacgctaaaaccACAGagccggagatcggctgaatagatgcaaaataataaaactcaacttattaactctggggaagtttgagaatttaaaaaaaaagtgttcctttaaggttGGTCACATATAACTGTTCGTAATTTAAGGTTTAGACTACAGCAAGTACACGACGTCGCATGAAACCTGGCCCCAAACCCGGCTAGCAGTGAAGAGCTCAGAGCCGTACCTGAAAGAGTCTGGTGACGATGTAGATGTAGGAGCCGGTGGCGGCCACCAGCATACACACGGCCAGGCTGGCATAGACGTTCTTCAGGTGCTGCTGAGTCGAGCGAGAGCTGCACAAAACACACGCCTTGAACAACACCAACAAAACAAGAGACCGGCAGCACGCTTAGAGGTGATTAACACACTTACATCTGAGAGAACTTGAAGAGAGCGTCGAAGTTTATGTTGCGATCAAACACGTTCATGTTTCTGCTGCTTTAGTGATCAGAGGTCACCACCTACACGAGAAGAAAAGCAGAAGAACACGGCGTGGAAGAACCCGACCCCAACCACCAGAACCAGTCCAACGCTACGAGGACGACCTTTCAGAGCACTTCAGAACATGTTACTTACAGAGAAGCATTGCCTAGGTACTCGATATTAGATGCAATTCACGTACAGTTAGGATAAAATGTAGATTATCAGATATTTAATAATCAGCTAAAGTTTTTCATCTATCCTTTACAAAAATGGCTTACTAactacaaacaatataattaaagcaCTGTGTTTGTAGTAAAACGGTTTCTGTTAAGTGTATGAGAAGAAACCCACGCTTGTTTTTGTAATAGAAAGCTGTGTTTGAcgtcaaatattaaataaactgacTGACTCTAATACGAGTGTCTCAGTAATAATCTGAAAGAACTAACTTAAAAATACAGGACTAACAAGAAGACTTTATCAACTAAAACTTGATCAACAAAAACAGGATCATTTCAACTAAATACGACTGATATTTACGGCTGAAGAAATCAATAGCAATGTCACAGAAatcaaaaaactgtttatttgatTGTTATTCCAGGAAGGACAGGAATGAATGAAACTTGTTGTAAACAGTTTCTAGCGTGAACTACTTCTACAGTTAGCCCCAGGTCAATGTCAGAGAAATCAGGTCTTCAGTGAGACCGTGTCCAGGCaggctgacctttgacctcatcGACCCGCCATTACAGAACTATCGAGACGAACACACATcctagcttttatttttaccgAAGTAAGACGTCATTTCCACCCACACCGACATTAAACGCTCGAAATCGTCGAAAGATCAACACTTAACTTCCTCCCGAGCCAGGAAGTAGAAAGAGTGAAAGTAAAAACCCGTGACAGAACCCTGACGTTCTTTAAACAacttcacaaacaaacaagcagctAAACCCCGCCGTGACACGAACCTGAAGCACTCGGTCAGcggtttacacacacacacacacacacacacacacacacacactcaggcacacacacacacacacacactcaggcgcgacacacacaaacacactcacacagacagacacacagacacactctcacacacacacagacagacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaattacacgGAGGCGGTAATCCTGGTTAAATCGCGCGCTGTGACGCAGACAGGAGTTCTCGGGGTTGTTTTGTAGTCGATATCGCTCTGATCGTGACGCGCTGTAATCCTCCTCTCTATCGACGCTGCTCTCGCTCGCCGCGCTACGGCTCACCAACTCGTGATCCCTTCATCGGACACGTATTCCTCCTCACGCCATAAACACAGCTCATTTTATTACCATAAGACGTGAAAGTGTGTCTGTTCCCGACCGCCGTGTTTCTGAAGGCCTCCCAGAAGCGTTTGACAAACGACGCGATGACGTCACGCGCGCGCTCTTCTTCTGGTTCTATTCTGACGTGTTTGACAGAACGTCACTCTGACGCGGCGGCGCCCCCTGCTGGCGAGCAGCGGCAGCTCAACACATTACACCATCAGGAAGGATTATAAAAACCCATTTCAAAGCCCACAGACACAAGACCATCCTCAAGTGCTTTACTGACCGTGATATTCCTGGGACTGGTCAGACAACACGCCTGAAtgaggagaaagaggagaaacagtggatccagcaacaacaacaacacag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115492 lncRNA upstream 631 247354 ~ 367172 (+) True G78063
TU115487 lncRNA upstream 16859 350619 ~ 350944 (+) True G78061
TU115514 lncRNA upstream 28127 338836 ~ 339676 (+) True G78072
TU115464 lncRNA upstream 38781 184597 ~ 329022 (+) True G78045
TU115462 lncRNA upstream 45819 179562 ~ 321984 (+) True G78043
TU115500 lncRNA downstream 12931 385922 ~ 389002 (+) False G78067
TU115501 lncRNA downstream 12931 385922 ~ 390781 (+) True G78067
TU115506 lncRNA downstream 16043 389034 ~ 411425 (+) False G78067
TU115466 lncRNA downstream 29454 402445 ~ 405473 (+) True G78047
XR_006252044.1 lncRNA downstream 30461 403452 ~ 404970 (+) True LOC122353670
XM_043252190.1 mRNA upstream 2634 351955 ~ 365169 (+) True LOC122354142
XM_043252191.1 mRNA upstream 2634 351955 ~ 365169 (+) False LOC122354142
XM_043252499.1 mRNA upstream 17361 348580 ~ 350442 (+) False LOC122354326
XM_043251865.1 mRNA upstream 86241 280680 ~ 281562 (+) True LOC122353958
XM_043251863.1 mRNA upstream 174946 190906 ~ 192857 (+) True LOC122353953
XM_043251538.1 mRNA downstream 24200 397191 ~ 403408 (+) True si:ch211-159e12.5
XM_043251539.1 mRNA downstream 52489 425480 ~ 438326 (+) True slc11a2
XM_043252676.1 mRNA downstream 67229 440220 ~ 442079 (+) True npffl
XM_043251949.1 mRNA downstream 69962 442953 ~ 448514 (+) True alas1
XM_043251954.1 mRNA downstream 80571 453562 ~ 456072 (+) True LOC122354000
TU115515 other upstream 17364 348517 ~ 350439 (+) True LOC122354326
TU115474 other upstream 33407 333069 ~ 334396 (+) True G78055
TU115433 other upstream 302655 63019 ~ 65148 (+) True LOC122353551
TU115525 other downstream 36342 409333 ~ 410684 (+) True G78083
TU115526 other downstream 39048 412039 ~ 412753 (+) True G78084
TU115545 other downstream 214993 587984 ~ 595328 (+) False iars1
TU115544 other downstream 218337 591328 ~ 595328 (+) False iars1
XR_006252083.1 other downstream 230147 603138 ~ 706550 (+) False atp2b2

Expression Profile