RNA id: XR_006252102.1


Basic Information

Item Value
RNA id XR_006252102.1
length 1056
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id LOC122354311
representative False

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 367803 ~ 373639 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTCACGCGCGCGCTCTTCTTCTGGTTCTATTCTGACGTGTTTGACAGAACGTCACTCTGACGCGGCGGCGCCCCCTGCTGGCGAGCAGCGGCAGCTCAACACATTACACCATCAGGAAGGATTATAAAAACCCATTTCAAAGAAATTCCGGGTATCTCTTGTTCTATAATGCCACAATAATGAGGAAGACCAATTGTTCAGAAGACCATCTTTCAGGTGATTTTGGAGCTCTTTATGCTTTTATCtgctaaaaaaactataaaactgcTGATTTCCTTCTCCAGCCCACAGACACAAGACCATCCTCAAGTGCTTTACTGACCGTGATATTCCTGGGACTGGTCAGACAACACGCCTGAAtgaggagaaagaggagaaacagtggatccagcaacaacaacaacacagaccCTTCATTCACTCCTCACTGACGACGGAGGAAATTAAACTTGAACTTTTTCTTTTaaggaaatgtttaaaaaagtgaaactttcatatatattttaggttCATTAGGTTCATGTaaagtatgttttgttttgttttaattagagCTTAaagctcataaaagtcaaaatacagtatttcaaaatatttgaaaacctGCATAAAACGCAGAGCTGAGACACAACTCACAACTCCTGAGTATCTTCcagtatatagatatatatatatttactcatttaGCAGGCACTTCAATCCAAACAAGTACATGCTGTATATTCTTAATGCTACCATTTtgaaagttactttttttataaacgAATATAAATATCATTCCATTGGTTGGTTACATATTATTTGTTACAATGATTCTGTTACAGTGTTtccagtaatattgtaatattgcctcataactacatttttattttcatgctgTTTAATGTCTATACCTTCTAAACAGACAGTGATTTTTTGCTGAAAGTGCTTGTCTATGAAGGTTTGCCAGTTTTACATCAAAGTTGCATTTCGGTAAAAAATCTGTCAACCTGctgaaatactaaaaaatgttgttcaattattttataaatatatatgtatgcatatacacCCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115492 lncRNA upstream 5254 247354 ~ 367172 (+) True G78063
TU115487 lncRNA upstream 21482 350619 ~ 350944 (+) True G78061
TU115514 lncRNA upstream 32750 338836 ~ 339676 (+) True G78072
TU115464 lncRNA upstream 43404 184597 ~ 329022 (+) True G78045
TU115462 lncRNA upstream 50442 179562 ~ 321984 (+) True G78043
TU115500 lncRNA downstream 12283 385922 ~ 389002 (+) False G78067
TU115501 lncRNA downstream 12283 385922 ~ 390781 (+) True G78067
TU115506 lncRNA downstream 15395 389034 ~ 411425 (+) False G78067
TU115466 lncRNA downstream 28806 402445 ~ 405473 (+) True G78047
XR_006252044.1 lncRNA downstream 29813 403452 ~ 404970 (+) True LOC122353670
XM_043252190.1 mRNA upstream 7257 351955 ~ 365169 (+) True LOC122354142
XM_043252191.1 mRNA upstream 7257 351955 ~ 365169 (+) False LOC122354142
XM_043252499.1 mRNA upstream 21984 348580 ~ 350442 (+) False LOC122354326
XM_043251865.1 mRNA upstream 90864 280680 ~ 281562 (+) True LOC122353958
XM_043251863.1 mRNA upstream 179569 190906 ~ 192857 (+) True LOC122353953
XM_043251538.1 mRNA downstream 23552 397191 ~ 403408 (+) True si:ch211-159e12.5
XM_043251539.1 mRNA downstream 51841 425480 ~ 438326 (+) True slc11a2
XM_043252676.1 mRNA downstream 66581 440220 ~ 442079 (+) True npffl
XM_043251949.1 mRNA downstream 69314 442953 ~ 448514 (+) True alas1
XM_043251954.1 mRNA downstream 79923 453562 ~ 456072 (+) True LOC122354000
TU115515 other upstream 21987 348517 ~ 350439 (+) True LOC122354326
TU115474 other upstream 38030 333069 ~ 334396 (+) True G78055
TU115433 other upstream 307278 63019 ~ 65148 (+) True LOC122353551
TU115525 other downstream 35694 409333 ~ 410684 (+) True G78083
TU115526 other downstream 38400 412039 ~ 412753 (+) True G78084
TU115545 other downstream 214345 587984 ~ 595328 (+) False iars1
TU115544 other downstream 217689 591328 ~ 595328 (+) False iars1
XR_006252083.1 other downstream 229499 603138 ~ 706550 (+) False atp2b2

Expression Profile