RNA id: TU115500


Basic Information

Item Value
RNA id TU115500
length 2212
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G78067
representative False

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 270996 ~ 411425 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGCGTGACCGTAAGAaactctttctgacggcacccattcactccatcTGTGACCTCATGATGACGAGCACATTCttgagtgaactatttctgAAAAAGTCACTGATAACAGtttgaaacattcaaaatattttattttgcatatcgATTTACAAACATTATATACTCttaatgcagctttaaaaaaaaaaaaacccaagcaTGAAACGGAAAGGTTTAGAGACAGGTGTTTGATGAGGTCTCTGTCAGCTCTTCGGCGGTCACTCATTTTACTGTCCACCACAAATAGTGTCAAACGGCAGAGTATCAGAGACTCAAATCACTCTGCGGCACATCCCTGAAAAGGTGTCCTCCGGTGAAGAAAACTACAGAAACTTTAGAAGTGAGGAAGATGAAGGCATTTAAACTCATGCAGATTACATCCATacagatcaaataaatatactggGAACACttcatttaaactattaaagatTGAGAACTGAGACTAAACTTCAGGTCTGATGTTAGAAcgacaaaatgagaaaaaagacAGATAGAATCAGATAGAAGTGAGGTGTGTGTCACTCACACGTGAATAAAGGAGCAGTGCACACTGATAGACGTACACCCTCGTCCAGCTAAGTTCATTTCTGATATCACACGCTGAACACGTTtgtaaacagttaaaaatgacATCCATTTTGAGCGCAGACCATTTCAGAAGATCCTCAAACATCTCGCTCATTTCAGAACCGGTTCTTCTAGAGTTCTTGTGTTAGATCGTCTGGAAGCCAGGACACTTACGTCATTAGTAAGGAATCAGAACGTATTAGAAATTCCCTGAGAAGAACTAGAAAACAAGGACGCTTTTCTTCAATCAGAAAAATGCTTCAAACCAATTTGTCgtgaaattcagaaaaaatgACATGAAGTTAAGAATCGAAAGCACAAGATTTATAAATCTAGCGTGTTACTCAGTGTATagatgaaaaaaacagcaatattaaaaatacacctTCAAGACAAACATTAGCACACCTCTGTTTCTTCATGAAGAACTAGCAGCTAGACGTTCACTTCATCGCTATCGTTCTTGTGTGGGTTCTGCTCTTTGAATCTGTCTTTGAATACAggaatatttactgtatatgtactctcaaatattattttggatcatttttcaacaaaaaagttacggactgcagctttaatgaaaaaaaagagaaaacctgTTTGTCAGTCTGGAGTTACAAGAAGAAAACGGTCTCGACTTCTTAGTAAAAGATGTTTAGTTTTGAAATCATTCTTTTACGCTGATTCCCGGCGGTGTCCAGCTCCAGGATTACTGTAATTACTTGTAGTTCTCTCACTTAACTGTAGGGGGCTCCAAACTCTCAGAACTACATGCAGCAAATGAAAAGCATGTTAATAATGGCCTGGAATCAGGTTGCTCTTACACAAATACACTgggttattaatattacttgCCAAAAGATGAAAGAGAGACCGAAAGCACATGTTTTTGTGAAGCGTCTAAAATTCCTCTCCCTGCTCGTTTAATAGCAGAGGAAGAGATACGTAAGAAATCCAGCACAAACACAGCTATAAAAACCACCGGAAGAGAGAGTCCTTCTTTCCCTCAATAAGTGACTGTAAGAAAGTAGTCTTCGTCTGAAGGTGTGTGCAAGGCTGCCTGAGGACGGATCTCAGACGGGGTTTAGGACAGAGCGCAGGAGTCAGTACTTTTAGCCAGGCTGTTCTCGGGCCCTCCGTCCTCGGCCTCGCTGTCCAGCAGAGCGGCGTCCGGCTGCGTGTCCGGAGTGGACGGAGCGGGGGAGAACTCGGACGGAGCGTCTTCGTAGCCGCTGCTCTCGTCGTAGTCGTCGGCTCCCGGAGCCTCGTGCTTCTGGACGTGAAGCGTCTTCGGCTGTAAGAGCCGCCCGGGGTCCAGATCCACCGAGGAGCCTCCGCTGCGTGTGTCCCCGTCCACTGAGGACCCCTCCGGAGGGGCCCGGAGCCAGACGGGCCCCGAGCAGGCCCTCGACTGAAGCGGCTCGTGGGGTCCCTCCTGcagaacacacaaaacaatCCTGActcgcctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252102.1 lncRNA upstream 12283 372426 ~ 373639 (+) False LOC122354311
TU115461 lncRNA upstream 12931 367803 ~ 372991 (+) True LOC122354311
TU115492 lncRNA upstream 18750 247354 ~ 367172 (+) True G78063
TU115487 lncRNA upstream 34978 350619 ~ 350944 (+) True G78061
TU115514 lncRNA upstream 46246 338836 ~ 339676 (+) True G78072
TU115506 lncRNA downstream 32 389034 ~ 411425 (+) False G78067
TU115466 lncRNA downstream 13443 402445 ~ 405473 (+) True G78047
XR_006252044.1 lncRNA downstream 14450 403452 ~ 404970 (+) True LOC122353670
TU115523 lncRNA downstream 16733 405735 ~ 408404 (+) True G78081
TU115531 lncRNA downstream 35384 424386 ~ 425078 (+) True G78089
XM_043252190.1 mRNA upstream 20753 351955 ~ 365169 (+) True LOC122354142
XM_043252191.1 mRNA upstream 20753 351955 ~ 365169 (+) False LOC122354142
XM_043252499.1 mRNA upstream 35480 348580 ~ 350442 (+) False LOC122354326
XM_043251865.1 mRNA upstream 104360 280680 ~ 281562 (+) True LOC122353958
XM_043251863.1 mRNA upstream 193065 190906 ~ 192857 (+) True LOC122353953
XM_043251538.1 mRNA downstream 8189 397191 ~ 403408 (+) True si:ch211-159e12.5
XM_043251539.1 mRNA downstream 36478 425480 ~ 438326 (+) True slc11a2
XM_043252676.1 mRNA downstream 51218 440220 ~ 442079 (+) True npffl
XM_043251949.1 mRNA downstream 53951 442953 ~ 448514 (+) True alas1
XM_043251954.1 mRNA downstream 64560 453562 ~ 456072 (+) True LOC122354000
TU115515 other upstream 35483 348517 ~ 350439 (+) True LOC122354326
TU115474 other upstream 51526 333069 ~ 334396 (+) True G78055
TU115433 other upstream 320774 63019 ~ 65148 (+) True LOC122353551
TU115525 other downstream 20331 409333 ~ 410684 (+) True G78083
TU115526 other downstream 23037 412039 ~ 412753 (+) True G78084
TU115545 other downstream 198982 587984 ~ 595328 (+) False iars1
TU115544 other downstream 202326 591328 ~ 595328 (+) False iars1
XR_006252083.1 other downstream 214136 603138 ~ 706550 (+) False atp2b2

Expression Profile