RNA id: XM_043252499.1


Basic Information

Item Value
RNA id XM_043252499.1
length 397
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC122354326
representative False

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 348517 ~ 350442 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCCCTACAGAAGGAGTGTTAATGTTGATTTGCCGTCACCTTGATCTCTGAAGACCGTAGCTTTCACTGTTTCTGAGGATCATATCATCTGGACAGGGATCATGGCCTATCAGTGCAAACTGGCTGAGAAACTGGTCATTCTGAATGATCGGGGTCAAGGAGTGCTGATCAGGATGAACCACATCaaaaaggtATGCACAGACCCAAAACGAAGACCATCAAACCTGACTGACAAAAGCATGGAATCTGCCGTAAAATACATTAACAGAAAATTCCCCAACATTGACATCAGGGGCGGCAGTCAACATCTGAGCAGCATACAGAAGCAGAAGTCAGCCATATTGGAGGGTCTGCACAGTTATTATGAGTCCTTCATGGATGTCATGGAGTTTAGGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115514 lncRNA upstream 8904 338836 ~ 339676 (+) True G78072
TU115464 lncRNA upstream 19558 184597 ~ 329022 (+) True G78045
TU115462 lncRNA upstream 26596 179562 ~ 321984 (+) True G78043
TU115455 lncRNA upstream 45362 160750 ~ 303218 (+) False G78038
TU115487 lncRNA downstream 177 350619 ~ 350944 (+) True G78061
TU115461 lncRNA downstream 17361 367803 ~ 372991 (+) True LOC122354311
XR_006252102.1 lncRNA downstream 21984 372426 ~ 373639 (+) False LOC122354311
TU115500 lncRNA downstream 35480 385922 ~ 389002 (+) False G78067
TU115501 lncRNA downstream 35480 385922 ~ 390781 (+) True G78067
XM_043251865.1 mRNA upstream 67018 280680 ~ 281562 (+) True LOC122353958
XM_043251863.1 mRNA upstream 155723 190906 ~ 192857 (+) True LOC122353953
XM_043251980.1 mRNA upstream 232079 69645 ~ 116501 (+) True LOC122354020
XM_043251325.1 mRNA upstream 283447 63006 ~ 65133 (+) False LOC122353551
XM_043252190.1 mRNA downstream 1513 351955 ~ 365169 (+) True LOC122354142
XM_043252191.1 mRNA downstream 1513 351955 ~ 365169 (+) False LOC122354142
XM_043251538.1 mRNA downstream 46749 397191 ~ 403408 (+) True si:ch211-159e12.5
XM_043251539.1 mRNA downstream 75038 425480 ~ 438326 (+) True slc11a2
XM_043252676.1 mRNA downstream 89778 440220 ~ 442079 (+) True npffl
TU115474 other upstream 14184 333069 ~ 334396 (+) True G78055
TU115433 other upstream 283432 63019 ~ 65148 (+) True LOC122353551
TU115525 other downstream 58891 409333 ~ 410684 (+) True G78083
TU115526 other downstream 61597 412039 ~ 412753 (+) True G78084
TU115545 other downstream 237542 587984 ~ 595328 (+) False iars1
TU115544 other downstream 240886 591328 ~ 595328 (+) False iars1
XR_006252083.1 other downstream 252696 603138 ~ 706550 (+) False atp2b2

Expression Profile