RNA id: TU115526


Basic Information

Item Value
RNA id TU115526
length 605
RNA type TUCP
GC content 0.58
exon number 2
gene id G78084
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 412039 ~ 412753 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCAACTCTTCTTagtttttaaagaacagaatAAACTTCAGATAAATGAAGGCTGCTAAACCCGTTCACTGAAGAAGGGTGAGGAGTCCCTGACTGATCGGAGTCACCTGCAGCTGATGGAGGCGCGACAGCCCGCGTCTGAAGAACAGGTCCCAGACGAAGCCCGCGGCGGAGGGTCCGGGCATCTGCTCCAGCGTCTTCACCTGACGCGACGCGGCGCACGCGATGACGTCAGCCCAGCGGTCGGCGCACCTGAGCAGCGGAAGCGCGCTCCTGCCGGACATCCTCAGAGCCTGCGGCGGCATCCTTCACCGGGCGCTCGCGCGGCGCCGCTCTATTTATAGAGAGACTTCCGCGCACACCTTTCCCGGGCTCAGCCAATGGCGTGCGGAGAGCGCCGACGCCCCGCCTACCTCTTCAGAAGAGCAGCCgaagaggatgatgatgatgatgatgatgatgaagtgtACTGTCACGAATCATGAGCTCACGATGACAGGTTAGGAGGAAGTGTGTCCTGATTCAGTGGCCGTGGATGatgtccagtgtgtgtgtgtgtgtgtgtgtgagtgagagagtgtgtgtgagtgagtgtgtgaatgcgag

Function

GO:

id name namespace
GO:0007507 heart development biological_process

KEGG:

id description
ko00100 Steroid biosynthesis
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes
ko05410 Hypertrophic cardiomyopathy
ko05414 Dilated cardiomyopathy

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115506 lncRNA upstream 614 389034 ~ 411425 (+) False G78067
TU115523 lncRNA upstream 3635 405735 ~ 408404 (+) True G78081
TU115466 lncRNA upstream 6566 402445 ~ 405473 (+) True G78047
XR_006252044.1 lncRNA upstream 7069 403452 ~ 404970 (+) True LOC122353670
TU115501 lncRNA upstream 21258 385922 ~ 390781 (+) True G78067
TU115531 lncRNA downstream 11633 424386 ~ 425078 (+) True G78089
TU115777 lncRNA downstream 476307 889060 ~ 913799 (+) False atg7
TU115811 lncRNA downstream 621779 1034532 ~ 1040210 (+) False tsen2
XR_006252047.1 lncRNA downstream 658321 1071074 ~ 1074580 (+) True LOC122353680
TU115972 lncRNA downstream 782471 1195224 ~ 1195463 (+) True G78370
XM_043251538.1 mRNA upstream 8631 397191 ~ 403408 (+) True si:ch211-159e12.5
XM_043252190.1 mRNA upstream 46870 351955 ~ 365169 (+) True LOC122354142
XM_043252191.1 mRNA upstream 46870 351955 ~ 365169 (+) False LOC122354142
XM_043252499.1 mRNA upstream 61597 348580 ~ 350442 (+) False LOC122354326
XM_043251865.1 mRNA upstream 130477 280680 ~ 281562 (+) True LOC122353958
XM_043251539.1 mRNA downstream 12727 425480 ~ 438326 (+) True slc11a2
XM_043252676.1 mRNA downstream 27467 440220 ~ 442079 (+) True npffl
XM_043251949.1 mRNA downstream 30200 442953 ~ 448514 (+) True alas1
XM_043251954.1 mRNA downstream 40809 453562 ~ 456072 (+) True LOC122354000
XM_043251952.1 mRNA downstream 44199 456952 ~ 493701 (+) False poc1a
TU115525 other upstream 1355 409333 ~ 410684 (+) True G78083
TU115515 other upstream 61600 348517 ~ 350439 (+) True LOC122354326
TU115474 other upstream 77643 333069 ~ 334396 (+) True G78055
TU115433 other upstream 346891 63019 ~ 65148 (+) True LOC122353551
TU115545 other downstream 175231 587984 ~ 595328 (+) False iars1
TU115544 other downstream 178575 591328 ~ 595328 (+) False iars1
XR_006252083.1 other downstream 190385 603138 ~ 706550 (+) False atp2b2
TU115925 other downstream 661991 1074744 ~ 1077399 (+) False cnbpb
TU115926 other downstream 661991 1074744 ~ 1077399 (+) False cnbpb

Expression Profile