RNA id: TU115531


Basic Information

Item Value
RNA id TU115531
length 612
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G78089
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 424386 ~ 425078 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

atcatcatcatctctctctctctctctctctcacacacacacacacacaccaccatcatcttcatcatcatcatcatcgctctctctctctctctctctcactcacacacacacacacttactacTGGAAGCTGTGGTCAGCCATGGGGTTGGAGTGCGCTCTCTGGCGGTAATAGCGCTTCTGCGGCATGGACACACTCATCCTGCTGCTGTCCGAGAaaatctcttcttcttcttcttttaggTTTAATGGCGGTAGTTAACTCCGCTGAAGAGGTACATTGCCGCCCACTAGACCGGTAGAAATAACACgtgcttcttttcttcttcttcgaTCTTATTGGCAGAGCGTCTTTAACACGTGCTCGCTGCACGCTCTGAACTACACGCGacgctcttcttcttcttcgtctgTCAGACGGAGCCAGACACGCCTCTTCTTCTTCGGGGCTTATTGGCTGGTTGTTGGGTTGCTGACAGCTGATTGGTTAATTTCCGCCACCGACTGGACTGGAGCACGGATCGGGATttattgaatgaaattaaacaaaaagccaagcaaaacaaataaaaaaaataaaaataaaacaaattattatattatgaaattCT

Function

GO:

id name namespace
GO:0004418 hydroxymethylbilane synthase activity molecular_function

KEGG:

id description
ko00860 Porphyrin and chlorophyll metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115506 lncRNA upstream 12961 389034 ~ 411425 (+) False G78067
TU115523 lncRNA upstream 15982 405735 ~ 408404 (+) True G78081
TU115466 lncRNA upstream 18913 402445 ~ 405473 (+) True G78047
XR_006252044.1 lncRNA upstream 19416 403452 ~ 404970 (+) True LOC122353670
TU115501 lncRNA upstream 33605 385922 ~ 390781 (+) True G78067
TU115777 lncRNA downstream 463982 889060 ~ 913799 (+) False atg7
TU115811 lncRNA downstream 609454 1034532 ~ 1040210 (+) False tsen2
XR_006252047.1 lncRNA downstream 645996 1071074 ~ 1074580 (+) True LOC122353680
TU115972 lncRNA downstream 770146 1195224 ~ 1195463 (+) True G78370
TU115991 lncRNA downstream 792146 1217224 ~ 1222835 (+) True G78380
XM_043251538.1 mRNA upstream 20978 397191 ~ 403408 (+) True si:ch211-159e12.5
XM_043252190.1 mRNA upstream 59217 351955 ~ 365169 (+) True LOC122354142
XM_043252191.1 mRNA upstream 59217 351955 ~ 365169 (+) False LOC122354142
XM_043252499.1 mRNA upstream 73944 348580 ~ 350442 (+) False LOC122354326
XM_043251865.1 mRNA upstream 142824 280680 ~ 281562 (+) True LOC122353958
XM_043251539.1 mRNA downstream 402 425480 ~ 438326 (+) True slc11a2
XM_043252676.1 mRNA downstream 15142 440220 ~ 442079 (+) True npffl
XM_043251949.1 mRNA downstream 17875 442953 ~ 448514 (+) True alas1
XM_043251954.1 mRNA downstream 28484 453562 ~ 456072 (+) True LOC122354000
XM_043251952.1 mRNA downstream 31874 456952 ~ 493701 (+) False poc1a
TU115526 other upstream 11633 412039 ~ 412753 (+) True G78084
TU115525 other upstream 13702 409333 ~ 410684 (+) True G78083
TU115515 other upstream 73947 348517 ~ 350439 (+) True LOC122354326
TU115474 other upstream 89990 333069 ~ 334396 (+) True G78055
TU115433 other upstream 359238 63019 ~ 65148 (+) True LOC122353551
TU115545 other downstream 162906 587984 ~ 595328 (+) False iars1
TU115544 other downstream 166250 591328 ~ 595328 (+) False iars1
XR_006252083.1 other downstream 178060 603138 ~ 706550 (+) False atp2b2
TU115925 other downstream 649666 1074744 ~ 1077399 (+) False cnbpb
TU115926 other downstream 649666 1074744 ~ 1077399 (+) False cnbpb

Expression Profile