RNA id: TU115926



Basic Information


Item Value
RNA id TU115926
length 1091
RNA type TUCP
GC content 0.51
exon number 5
gene id cnbpb
representative False

Chromosome Information


Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 1074707 ~ 1077399 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GGGGGATCAAGAACTGTCCGAACGCCGGTCGGGGCCGCGGGAAGGGCCGCGGTCGAGGGAAAGATCTCTTCTGCTACCGCTGTGGAGAACCGGGCCACGTGGCGAGGGACTGCGAGAGGACCGAGGATGCGTGCTACAACTGTGGCAGAGGCGGCCACATCTCCAGGGACTGCAAGGAGCCCAAGAAGGAGCGCGAGCAGGTCTGCTATAACTGTGGTAAAGCCGGACACATGGCCCGGGACTGCGACCACGCCAACGAGCAGAAGTGCTACTCCTGTGGCGGATTCGGACACATCCAGAAGGGCTGCGAGAAGGTCAAGTGCTACAGGTGCGGAGAGATCGGACACGTGGCCGTACAGTGCAGCAAGGCCAGCGAAGTCAACTGCTACAACTGCGGGAAGTCCGGCCACGTGGCCAAAGAGTGCACCATCGAGGCCACCGCTTAGTCCCGTCTCCTCGCTCGCCCCTCCTTTTTCTGATTGATGacgAGACCGAGGTAGCCTACGAGCGATTGGCCTGGAAAAGCGGCACGGGACACACGCGGTCGGGTCTGTCCGGGCCAAACCAGCAGCGCGCAGCTCCGTGGAGAAAACGACGACAAAATAGATACGTAACGCGTGACGTTAAGCAAACGACTTTATAGCATATTCTGGAAACCTCGTGTAACGCCAGTTTCAGAAatcctttgtaaaaaaaaaaaaaaccgcgGGCTGCTCGATCATCCGGGGCGGCCGCCGCGTCGAAAACCTAGTTCGTGATCCCAGGCGAAGCGGACGGACGGAGATTAGGTCGCTCTACCCAAGGTGAAAACTTCAatacaagaaaaacaacaaaaaaaagaaagagtcgtaaaacagatttggagtTCGAAGAAAGGCGAATGTTTTCACAgaaatcaaaatgttatttttgtacaataTCACTTAGACtactctaaaataataataataataataatgataataaaaaaagactttcatTTGCTTGTACTCAGTTTTTAAGTCGGAAGGTGAATGCAACTGAAGTTCTAGGAcatagaaatgtaattttaaactatCAATAAATCTGGAGGAGGAAGGGGTGTGAAGACT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_006252047.1 lncRNA upstream 164 1071074 ~ 1074580 (+) True LOC122353680
TU115811 lncRNA upstream 34534 1034532 ~ 1040210 (+) False tsen2
TU115777 lncRNA upstream 160945 889060 ~ 913799 (+) False atg7
TU115531 lncRNA upstream 649666 424386 ~ 425078 (+) True G78089
TU115523 lncRNA upstream 666340 405735 ~ 408404 (+) True G78081
TU115972 lncRNA downstream 117825 1195224 ~ 1195463 (+) True G78370
TU115991 lncRNA downstream 139825 1217224 ~ 1222835 (+) True G78380
TU116026 lncRNA downstream 199116 1276515 ~ 1277127 (+) True G78400
TU116101 lncRNA downstream 342945 1420344 ~ 1421787 (+) False rbms2a
TU116102 lncRNA downstream 345334 1422733 ~ 1425764 (+) True G78455
XM_043252078.1 mRNA upstream 20876 1046350 ~ 1053868 (+) True mkrn2
XM_043251268.1 mRNA upstream 34505 1034413 ~ 1040239 (+) True tsen2
XM_043251269.1 mRNA upstream 34625 1034409 ~ 1040119 (+) False tsen2
XM_043252605.1 mRNA downstream 140 1077539 ~ 1083253 (+) True isy1
XM_043252606.1 mRNA downstream 140 1077539 ~ 1083253 (+) False isy1
XM_043252603.1 mRNA downstream 6572 1083971 ~ 1093073 (+) True zgc:77375
XM_043251517.1 mRNA downstream 21094 1098493 ~ 1105706 (+) True nuf2
XM_043251515.1 mRNA downstream 21165 1098564 ~ 1105706 (+) False nuf2
XR_006252083.1 other upstream 368194 603138 ~ 706550 (+) False atp2b2
TU115545 other upstream 479416 587984 ~ 595328 (+) False iars1
TU115544 other upstream 479416 591328 ~ 595328 (+) False iars1
TU115526 other upstream 661991 412039 ~ 412753 (+) True G78084
TU115525 other upstream 664060 409333 ~ 410684 (+) True G78083
TU115960 other downstream 109467 1186866 ~ 1191721 (+) True LOC122353696
TU116128 other downstream 408308 1485707 ~ 1510874 (+) False rargb
TU116164 other downstream 513345 1590744 ~ 1593125 (+) True G78500
TU116178 other downstream 567232 1644631 ~ 1726097 (+) True G78506
TU116166 other downstream 600838 1678237 ~ 1680177 (+) False nabp2

Expression Profile