RNA id: TU115960


Basic Information

Item Value
RNA id TU115960
length 2066
RNA type TUCP
GC content 0.43
exon number 4
gene id LOC122353696
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 1186866 ~ 1191721 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCGAATGCATGGCAGAGAGCGGGGTTGATGGCGCGGTGTTCCGGCGGGAGGTGCCTCGCAGGCTCATAGGTGCTCGCTATAAAACCTGCGCGAGCGCGGCCGAGGATGCCGTTCCGTCGCGCTCCGCTCTTCCGTCCGCAAACCTGAAAACACGACAAACGAGGAGCATTCGTGTGGAAATAAGCCAGAGACGAGCAACATGTCGCCGCAGTTGGATCAACCCTGGCTTCTAAACTGACTTTGTTCACGGAGACTATCTGGAATGACTGTGATGGCCAAGGTGTCATTATTGATACGTTTggaaattttgttttttattggaCTGACAGTCACCATGGCGAACGGATTTTCCCCCTTTCGTCAAACTGGGCTCATGGAAACCAGCGCCAAGGATTTAACCAAAGTGTCAAGTGTAACTCTGAAGCAGTTGGATGCGTCTGGATTAAAACCCGGAGCTTGTTATTTGTGCCAGATCCTGACACCTCGGAAGAGAGCCAAGAGATGTACGTGTTACTCATACAAAGACAAAGAGTGTGTTTACTACTGTCACTTGGACATCATCTGGATCAACACACCAGAGCGCACCGTCCCATACGGCTTGTCGAATTATAGAGGCTCTCAGCGAGTGCGGCGTGCTGCCCAGGACAGCGTCGGAAGTCAGCGCTGCGTGTGTGCTTTACACAGCGACCAAAAGTGTGACGCTTTCTGCAGTGGAAGTTGGGGGAGGTCAACATGACTGTCCATTGGAGCACAGCTTAACTGATATTCACTCATCCGTTGGACTGCTTCTTCATTCTTCTGTCCTAACACCTGGAGAATCACCTCTGAGAAAAGGTTCATGTCTGTCCAAAAGGAAGGCTGTTGGAATTCCATTACTGAGAGGGAGAATTAAGGAGAGCAGAGAGAGTTGGGAAATACTTGCGCTGTCGACGTGAAAGCGTTACCGCACCTAAGCTAACACATCTCTGAAGTAGCCATGCATTGACTGCGACCATGTGAGTCACATTCAGGCAAGATGTATGTGATGGTCTGAATTATGGACTGGATCGACTTGCCACCACGATCTGATACAAATCAGATGTGCAAGATGGAGTCAAATAAGCATCACACACAGGACTTTGAATATTTGAAACCGTTCAGACTAGTCACCATGTAATGCGTTTAAAGGACTTCTTGAGCAAAAAGTGCTGTACAGCAAACTCTACACTGCAACATTGGCTTATTCTAAAAATTATGTTCATATCTAATACAGCCTTTCATGTTCATAATTGAATAATACATTTCCTCAAGAGTATGAATAATTAACTAAGTAGACAATAGGAAAATTCCTAGCTTTTCTTGAGCATTTAAGAAATCTTGTATATCACAACTAACCAAAAGGTGTCTCTTTTAAATGCCGCAGTAATCCACGTCCTACTTTATGAATAGTTGTGATAAAGAGTATATGCAAAGAAATGTCTATTTATTCCAgtaaccaaatattttttttcataatatattctCCAAACGGAAACAAAAAAAGGACTGTTTTCTTACTATTTCAAACCAATACGAGAACAAATATCCTTAATTTATTCAGAACTGTagcggtgaaaaaaaaaaatatataacaatgaaACAGGgagtaaaataaacacaattcaTAAACTGATGATGGATTGTAGCGTCTCTTACTTTTCATGGCCGACATGCAGGTCATTATGTATGTAAAGGTCCTGTACAGATTctctgtttaatattaaatgaaatcctttttataaccttttttttgttttacctaCAAGTCGTCTTTTTGTGTGCTCTTATTTGGCTCAGTTGTGAGCAACAAACCTCAGAAATGCTGAGAAGTTTTCCGCGGAGCTGATTTGAAACCTCCTGGCCTCTGGCTAGATTACGTTCTCTCATTACTTTGCAAAGGTACGTCTTATCCTTCCACAAGGGGGGCCACGCAAGAATTGTTTGCTGTCTTGGAATATGCCCTCAGTACACCCTGAGAAATAAGAGGTAATTTCCTCTCATGGTGCATGATGGGGTATGGCAAAAACAGGCAGTTCTCATCCAGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252047.1 lncRNA upstream 112286 1071074 ~ 1074580 (+) True LOC122353680
TU115811 lncRNA upstream 146656 1034532 ~ 1040210 (+) False tsen2
TU115777 lncRNA upstream 273067 889060 ~ 913799 (+) False atg7
TU115531 lncRNA upstream 761788 424386 ~ 425078 (+) True G78089
TU115523 lncRNA upstream 778462 405735 ~ 408404 (+) True G78081
TU115972 lncRNA downstream 3503 1195224 ~ 1195463 (+) True G78370
TU115991 lncRNA downstream 25503 1217224 ~ 1222835 (+) True G78380
TU116026 lncRNA downstream 84794 1276515 ~ 1277127 (+) True G78400
TU116101 lncRNA downstream 228623 1420344 ~ 1421787 (+) False rbms2a
TU116102 lncRNA downstream 231012 1422733 ~ 1425764 (+) True G78455
XM_043252534.1 mRNA upstream 7067 1168152 ~ 1179799 (+) True znf831
XM_043252533.1 mRNA upstream 7067 1168168 ~ 1179799 (+) False znf831
XM_043251517.1 mRNA upstream 81160 1098493 ~ 1105706 (+) True nuf2
XM_043251515.1 mRNA upstream 81160 1098564 ~ 1105706 (+) False nuf2
XM_043251514.1 mRNA upstream 81160 1098605 ~ 1105706 (+) False nuf2
XM_043251324.1 mRNA downstream 20126 1211847 ~ 1213545 (+) True ppp1r3db
XM_043251564.1 mRNA downstream 69062 1260783 ~ 1264227 (+) False acot8
XM_043251563.1 mRNA downstream 69086 1260807 ~ 1264227 (+) True acot8
XM_043251561.1 mRNA downstream 72564 1264285 ~ 1269596 (+) True srsf6b
XM_043251958.1 mRNA downstream 78362 1270083 ~ 1276013 (+) True ift52
TU115925 other upstream 109467 1074744 ~ 1077399 (+) False cnbpb
TU115926 other upstream 109467 1074744 ~ 1077399 (+) False cnbpb
XR_006252083.1 other upstream 480316 603138 ~ 706550 (+) False atp2b2
TU115545 other upstream 591538 587984 ~ 595328 (+) False iars1
TU115544 other upstream 591538 591328 ~ 595328 (+) False iars1
TU116128 other downstream 293986 1485707 ~ 1510874 (+) False rargb
TU116164 other downstream 399023 1590744 ~ 1593125 (+) True G78500
TU116178 other downstream 452910 1644631 ~ 1726097 (+) True G78506
TU116166 other downstream 486516 1678237 ~ 1680177 (+) False nabp2
unassigned_transcript_1592 other downstream 668576 1860297 ~ 1860368 (+) True trnaq-uug_15

Expression Profile