RNA id: XM_043251430.1


Basic Information

Item Value
RNA id XM_043251430.1
length 5425
RNA type mRNA
GC content 0.43
exon number 14
gene id rbms2a
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 1419520 ~ 1448960 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGATGTCAAACATCTAAAAGATGATTAGAAACCAGCGCTCTCCTTCAGAGTCTTCCCGTAGTTGCCATTTTCCTTCCTGTGTTCTGCCCTCGGTGTGTATTACAGGTGGAGTGAAATTAAGAATTATTACACAAGCAACCTATTATTGGCTTCCTTTATAGACTGTACTTAGTGTTTTTGGAGCTGTCTGGTCAGGTAGAGCTTTAAGGAGGCGAGCGAGCGACTTCTGAAGGCTGCTGAAGATGTTGTGCAAGAGTCAAGCGTCTGGAATGTTTGTCGTCACAAGCGTTGGACTTCACTGCTAACAGATCGACGGAGGGAACGGCGCGTCCAGATTAATAATACAGACCGAATGCAACTCGAGCCCGTCGTTTATTTAATCGCTCTGCACTGATGAATTTCCAGACCTCTTCGTGCCGGCGCATTGATTACAAGTACGGCTTTCCCTTCACGGGGTCATTGTGGCTTTGTCCACGAGCTGAACTGAAGGGATAGCTAACCTGTCACCGCTTACGAACCCTCAACGTAGCGTAAATCAGGACTAGGCCTTAGTTCAAGCCACTTTTACCCAAGAAGAAAGCCTGCAGGAGTGCCTCTTGACGCGGGATAATGACACCGGCATATTTTGAGAGACGCGAGCACGATATTTCCAGCTGTTTATCCTTATCTGCGAATGCCTTTCATCTGCTGAACGCACGCTAAGATGTTTTGGAGAATGCTGGTAACCAGACCGCTGTTCTAGAAATACCCAAGCCTATGTGTCCTCCAGCCACCAGATGGCTCTGTCCAGTCCCAACACCAACAGCAGCAGCGCGAGCAGCGCCGGAGGCGGGGAGCAGCTGAGCAAAACCAACCTTTACATCCGTGGACTCCATCCAGGGACCACGGACCAAGACCTGGTCAAGCTCTGCCAACCgtatGGAAAGATTGTGTCCACCAAGGCTATTCTGGACAAAACTACCAACAAGTGCAAAGgcTACGGCTTCGTGGATTTCGACAGTCCTGCAGCAGCACAGAAGGCTGTGACGGCGCTCAAGGCCAGCGGGGTTCAGGCTCAGATGGCCAAGCAACAGGAGCAGGACCCTACCAACCTGTACATCTCTAACCTGCCCGTGTCCATGGACGAGCAGGAGCTGGAGGCCATGCTCAAATCCTTCGGTCAGGTGATTTCCACACGGATCTTACGGGACGCCAACGGAACCAGCAGAGGAGTGGGGTTCGCAAGGATGGAATCCACAGAGAAATGTGAAGCCATCATTCagcattttaatggaaaatatatcaaaaccccACCTGGAGTGCCAGTACCTACAGAACCGTTGTTGTGCAAGTTTGCTGACGGAGGACAAAAGAAGCGACAGAACCAGGCAAAATACCTACAGAACGGTCGACCCTGGGCTAGAGATGGTGAAACGGGAGGAATGACGCTCGCTTACGACCCAGCGGCCTTACAGAACGGgttttattcTCCTCCGTACAGCATCGCTCCGAACCGAATGATCGCTCAGACCTCTCTGTCTCCGTACATGCCCTCACAAGTACCATCCTACCAGgtgcaCAGCCCGTCCTGGATGCATCATCAGTCGTACCTCATGCAGCCCACCGGGGCCGTTCTGACTCCAGCTATGGATCACTCGATGTCCATCCAGCCCACGTCTATGATCGGACCCCTGACCCAGCAGCTCAGTCACCTGTCTCTCGGCAGCGCCGGCACGTATATTCCCAACGCAGCTATGCAAGGAACGTACATCCCTCAGTACGCCCCAGTGCCTCCCTCTAGTGTCACGTTAGAGGAAAACAGcggacagcagcagcagcagcagcaggtttCCATGGAGACGCCTTCAGAACACACTAATTATTCCTATCAACACAGCAAATGAAGCTACGGTGGTGTGGAGGTGCTCGCCGCGCTCCGGACGCTGGGAGTCTCTCGGGACCGACGGAGGACCGGAGACGACGCGGATCACGAAAGGAGCGGGCATCTTTTGTAGGACAGAGACATAAAAGGAGGTCACTCATCTTTTGTTCGACTCCTCTCTCTTCAGGAGTCCCTCGGCCAACGGTGGGAGAAGTGCAGAAGAGCTAGCACTCGTTCATCTTTTTgataacaaaacagaaaaaaaaaaaagtgtaaaaaaactaCGTTGATTTTAGAAAAGGGTAAGGAAAACACAATGTGTTCTTTTATGCACGTAATGgcaaattcttatttttaagaacTAATTCTTTAATATGGGAggatcaaaaaagttaaaaatgtgttttttgtaaaatatgcaacttttttaaagatttgttcttttttttttcttcagtcagcagcagtaagatatttttgtacAGATTAATATGCAAACAGTGCTTTTGGGTTGTCCTGTTCTTGAACCTGTCGTGTGATGTTTAGGcgtttaaaaccatttaaagcCACTTCTTCATGCGGCGGCCATTTTAAGAAATAGTGATGAAATCACTCTAATCCAATCCTCTCTTAAAGCAACAGACAATCattaacttattatttattacaggtGTTCCTGCATAGCGAGGCAATAAAGCTTTGTCCATTTGAGTTCGTATCAAATATTTGATgcagaaatgaataaattagtttaattaagTTTATAAAAAGTCGTTTTATGAGGGgcattttaaatctaaagaTAACCTGCCAAACGTTCACGATCaattcctttttatttaaaattaaaaaaacattttgttagtTTTCTGATGTGTATACAGTAACGGCACCCAATGTTTCAGGTTTCTGAATGCTGTTTAAACGTGCTTGATAAAGATCATAGTGTTTCGTACAGATGAGTCTCGAGGAAGTGACTTTAAGTGGTTATTAATATCAAAAATAGTTCATAAAAGTGATGATAACACATGACTTTGAGGTTTGTCGATCCCACACTGCTAGACCTCGGCTGTAGGGAAGCAGATGCACGTTTCAGTCTGGTCTGAAgcttcacttttcttttttaaccgtAGAAATCAATCCATCAAACACATGAGAACAGAAGGAAATCAAGGCCTACATCTTACACGTGTTTtgtagattatttaaaaaatttgccTGTCTTAACCTTCTACGATGAAGTTTATTTGTGCTACCTTTTATCTAAAGTTTCCAACTACAATCGTCCGAGGTGTAGATTTTGAGAAGTGTTCATCAGTGAATGCTGAAGAAACATCACAGTGATGCACAGGTTATCAACCCATGAACATCTTGAGAAGAGAGAAGCAAATCCATCGAGATGTTTTTTCACAAACCGTTGCTTCTGGCTgaaatatgagtccataatccataatactGCTTTCTCCGGTTAAAAATCTCATGAATAAGGACAGAATCTGCACAGATCGAGTACCGTTCACAAGCGGAAACCGTCCAAAACGGCTctgaattttaaaagttaaactttattaaaaatgattaaatatttttgtctgaaaCATTGGtttgtagggttttttttcagatatttttgtcTGAAGCAAACtcctccagatgttcactgatggactggagttctGTGGATgatcgtgatgtttttatcagactctcattctgatgaaACGCTGGAAGCGGAGACTCATTTCTCCAAATACGTTCCCAGACCCGAGgcctgtgttttattgttagcGTGTTAAAAGAGAGACGTTagcagtgtgtgtgtcatcaggTTGTGTGTTATCATGGCTTTTCCAGAGATTTGTAGAAATATCTTCCAACCGGTGCTGGGGTTATACCTGAGACACGTATAGCAGGAAAAACTCTTCTATGAAACAGATCACGAAGGACAGAAGCAGTTCTTCAGCGCATGTAGTCGCTTTCTTCCTTCATGCTGCTGGTTTTTTAATGATCATGATTTTATCCTTCAAGTGTGATTAGCTGTAGTGTTTGGGCAAAGCTTTACTTTCTGAAAACGTGTCGCCgttcctttttaaaatgccaGATGAATAggatttttgtgtgcaaaggaAAGACATTTTCTTGAGTTTCTTTATGTTCTTCTCTGtgctgtttgttgttttacttGAAATGTACTGTCTCGGTCAATCATGGAGTCTGAAGGAGTCTGAATATCCAAAATGAAACGTTTTGATATCATCGAGTTATTTTCGTACACTTAAACATACTGTAGAAGTGTCTTACGCTCTTAAAAAACGAAGGTGccatttttgtctaaatggttccgtAAAGAAcctctgaagaacctttctgttccACTGAACGTTATTGAGGTTCCTCAGATTCTAGACACGCCTTTGGTTCTTTGTGAAATCAGTAATGGTTCTTCTACGGCATCTCTGTGAGGAACCTTTGAAGCGCCTTTATTTTGAAGAGCGTAGAGTAGAATGGCTCTTCTATAGGATAGAAACACAAGGGCTTATATTCTAAAACACTAAAGACACGACGCACCGTCTGAGAGCTTCCCttgatgcattttacattttaatgaatgtaaagCCATGAACTATTAAATGGTTTTCATTAAGAGACTCTCCTCCATCCATAAAAATAGCTGCTAGCGCGATTACCGTCTAGGATAGCTTGACATCGCATCCAAAGACGCGCTCAATACCTCTTTTACAGTTTACCATCAGTCTTCAGATTCCCAAAGAACGGATTCGTTCGGCCACCAAAGATAGCTACGCCACCGAGACACAACATGACTTTAGAGTACGACAGCAAATTGTTTCCTACTAAAAAAATGGTCTGGTCGTTTTCCTTTTCAGTGTGACTTTACCGTTGATGTATTCGAGTCAGATCTTCTGTACTAAACTCATTTTCGCAGTTCGCCTCATGAAGGAAAGGGGGATTTATTTCGGTTGTGGAGCTGATAAATCGTTTCGTCCATTATTAACACAAGACATTAAACATGGTTTTGAAACTATGAAATGATGTATTGCTTTTTATTCAGATCGACCGCATACATCTAAAttaccgttttatttttttaaccgcATCGATCAGTTCAGATTTTCCAAAAAGAGCTGCTAGTTTCCGGAGGAGATCATTTCATAGTTTCAAAATGTGTTGCTGCTAACATGGGGTGTTCAAGCTGTTCGCCAGATAAAGCCATAAAGTTATTTTGTGTTGAAGCTGTAACCCAAGTGCCTCAAGAAACGAGCTGTTAGTTGTTTTGGGTCGGGAGACTGAGACGTGTTTGcgctggtggtggtggtgatgtgATTATTGAACACATGGCTTGTCTCTtgaacagctttttttaaacattctttaTTTATAGGATAACACGTGTTGTACAGGTAGCTGAAGAAACAGTTTGGTGGTTTGTTTGCATGTTCACCGGAGCTTCCAGCCGGACGTTTGTCTTCCTGTGCCACAGTTTCTGATTTtctgttatctttttttttttttaagaaaaactaaaaaaaaaacaacaaaaatgtt

Function

GO: NA

KEGG:

id description
K24990 RBMS; RNA-binding motif, single-stranded-interacting protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116026 lncRNA upstream 143294 1276515 ~ 1277127 (+) True G78400
TU115991 lncRNA upstream 197586 1217224 ~ 1222835 (+) True G78380
TU115972 lncRNA upstream 224958 1195224 ~ 1195463 (+) True G78370
XR_006252047.1 lncRNA upstream 345841 1071074 ~ 1074580 (+) True LOC122353680
TU115811 lncRNA upstream 380211 1034532 ~ 1040210 (+) False tsen2
TU116118 lncRNA downstream 20708 1469668 ~ 1471384 (+) True G78467
TU116121 lncRNA downstream 30214 1479174 ~ 1482149 (+) True G78468
TU116134 lncRNA downstream 64919 1513879 ~ 1514178 (+) True G78479
TU116125 lncRNA downstream 73016 1521976 ~ 1524078 (+) True G78471
TU116126 lncRNA downstream 75387 1524347 ~ 1529157 (+) False G78472
XM_043251829.1 mRNA upstream 5622 1308673 ~ 1414799 (+) True lrp1aa
XM_043252343.1 mRNA upstream 119622 1291108 ~ 1300799 (+) True LOC122354215
XM_043252016.1 mRNA downstream 36805 1485765 ~ 1517963 (+) True rargb
XM_043252018.1 mRNA downstream 36807 1485767 ~ 1517963 (+) False rargb
XM_043252017.1 mRNA downstream 53766 1502726 ~ 1517963 (+) False rargb
XM_043252019.1 mRNA downstream 53766 1502726 ~ 1517963 (+) False rargb
XM_043252502.1 mRNA downstream 87067 1536027 ~ 1538014 (+) True hoxc13b
TU115960 other upstream 228700 1186866 ~ 1191721 (+) True LOC122353696
TU115925 other upstream 343022 1074744 ~ 1077399 (+) False cnbpb
TU115926 other upstream 343022 1074744 ~ 1077399 (+) False cnbpb
XR_006252083.1 other upstream 713871 603138 ~ 706550 (+) False atp2b2
TU115544 other upstream 825093 591328 ~ 595328 (+) False iars1
TU116128 other downstream 36747 1485707 ~ 1510874 (+) False rargb
TU116164 other downstream 141784 1590744 ~ 1593125 (+) True G78500
TU116178 other downstream 195671 1644631 ~ 1726097 (+) True G78506
TU116166 other downstream 229277 1678237 ~ 1680177 (+) False nabp2
unassigned_transcript_1592 other downstream 411337 1860297 ~ 1860368 (+) True trnaq-uug_15

Expression Profile