RNA id: XM_043251539.1


Basic Information

Item Value
RNA id XM_043251539.1
length 3007
RNA type mRNA
GC content 0.50
exon number 17
gene id slc11a2
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 425480 ~ 438326 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCGTCAGACTGTCACGTGACCCTGCGCTCgggactcttattttgacaCGCACCGCTCCTGTCACCTTCGCGTCCTCATGGCCGGAGACTGCAGCGGCTCTTcatcctcctgctcctcctcttcctcctcaggtGACGATTAAAGCGGCGAGGTCACCAGCACTTCCTCCGTTTCCCACAATCCTTTGCTGCTGATCAGTTGAATGAAAGCGAGCGCTGAGAAGAAGAGTCTTCATCTCCTTTAGGGTCACTGATCATCTCTTGGGTTTGTCTACTCTGAGCACTCGTGGAGCTCATGAAGACCGAGCGGGACGGAGACGGTGCTCTGGAGGAGAGCGGCTCTCAGGAGCCTGACCTCTACAGCCCGGTGTCTCCGGCCCCGCAGCAGGAGCCCGTCTCCACATACTTCGAGGAGAAGGTCCCCATCCCTGAGGATGACGTCACTAAGCTCTTTAGCTTTCGGAAACTCTGGGCCTTCACTGGGCCGGGCTTCCTGATGAGCATCGCCTACCTGGACCCCGGGAACATCGAGTCTGACCTTCAGTCTGGGGCGAGAGCGGGATTCAAGctgCTCTGGGTTCTGCTGGGTTCCACTATCATCGGTCTGCTGCTGCAGCGTCTGGCCGCTCGTCTCGGGGTGGTGACTGGGATGCATCTGGCCGAGGTCTGCAACCGTCACTACTCTACGGTGCCGCGGATCATCCTGTGGCTGATGGTGGAGCTGGCCATCATCGGCTCTGACATGCAGGAGGTCATCGGCTGCGCCATCGCCCTCAATCTGCTGTCGGTCGGCAGGATTCCTCTGTGGGCTGGAGTGTTGATCACCATCGTCGACACCTTCGTCTTCCTGTTTCTGGACAAGTACGGTCTGAGGAAGCTGGAGGCGTTCTTCGGGTTCCTCATCACCATCATGGCTCTCAGCTTTGGTTTCGAGTACGTGCGAGTGGCTCCAGACCAGGGCGAGGTGCTGAAGGGCATGTTCTTGCCGTACTGCAGCGGCTGTGGACCCACGCAGCTGGAGCAGGCCGTGGGGATCGTGGGAGCCGTCATAATGCCCCACAACATCTACCTGCACTCGGCTCTCGTGAAGTCCCGAGACATAAATCGAGCAAACAAGAAGGAGGTGAAGGAGGCCAACAAGTACTACTTCATCGAGTCCTCCATCGCTCTCTTCGTCTCGTTCCTCATCAATGTGTTTGTGGTGGCCGTCTTTGCAGAGGCCTTTTATGGCAAGACCAACATGGAAGTGAGTCAGCAGTGCAACGAAACAGGAAGTGCTCACAGTGAGCTGTTCCCAGCCAACAACGAAACCCTGGAGGTGGACATCTATAAAGGGGGTGTGGTTCTGGGCTGTTTTTTCGGCCCGGCTGCGCTGTATATCTGGGCCATCGGGATCCTCGCCGCTGGACAGAGTTCAACTATGACCGGAACCTACTCGGGTCAGTTTGTGATGGAGGGCTTCCTGAACCTGCGCTGGTCCCGCTTCGCCCGTGTGCTGCTGACCCGCTCCATCGCCATCTTCCCCACGCTGCTGGTGGCCGTCTTCGAGGACGTCCAGCATCTGACCGGCATGAACGACTTCCTGAACGTGCTGCAGAGCATGCAGCTGCCCTTCGCTCTCATCCCCATCCTGACCTTCACCAGCCTGACCTCGCTGATGAACGACTTCGCCAACGGACTCGTCTGGAAGATCGGCGGAGGTCTGCTCGTCCTGGTGGTGTGTGCCATCAACATGTACTTCGTGGTGGTGTACGTGACGGCCCTCAACAGCACCATGCTCTACATCTTCTCCGCCCTGCTGTCCGTCGCCTATCTCAGCTTCGTCTGTTACCTGGTGTGGCGCTGTCTGATCGCTCTGGGCGTCTCTCGTCTGGACTTCAGAGGCTCGTATCCTCCCTCGGTTCTGGTGGATGAACAGCCGGAGTTTGACTCCTGATCACTCagagtttcttcttcttctgatgtGAGGAGCGTTCTTACTGTAACTGACAGTTCGATCCAAAAATCACGTTTTCCTGCTTCAGTCCTGATCTTTATGTAGATCTACTATTGTAGATCTGACAGGACCGACAGAAAACGTATTTACTGCAACAGCTGAAGAAATATGATTCCTAACAGAGAGTACACCGAGTGTAGAATCAGAGTAAAGATAATTCAACAGTACagattagaaatatttaatgactCACTAACTTACTAATGAGCTGCAGACTAGATTGTTCTTATCATGAATAAGTCAAGGAAGTGATTTTATGACTCTTTGCCCTAAAACAAGTGTTTTAATGTCTGAACGAAAGAGaaagaagtatttattttatcaaaggaagatttttttcatttcaaagattGTGTTGTTATTGGCGGTTGATTTGAGTTTAGTTGCATCACTACTTCAGAGtttctgaacaaaataaaaagattagtttatgcagctttaaaaaaaaaacaaaaaaaaaccaaatgaaaacagaagcCACAGAAGTGCCTTGAAGTCTCTGTTTGGTGTCCGTGTCCTGTCTGAGGTCTTCTTTAGGAGACGCTCGTGATCGTGAGGTTGGTTTTCTGCTAGTAACTGATGATGTTTGTGTCGCAGCGATCTGAAACACATTCCCAAAGTCTTTCAGCTGAGAgagatgtatttgttttaagacatgAACCTTATATACTTGATGAACTGAGTCTGGACACACTGTACACATTAATAAAAGCCCAAAATGTCATCATGAAGtatcaaatgttttaatgtgacaGAAACAAACAGTATCTGAGGATCGAGGAGAAACTAATCAAATATTAGCCCAGCTGAACAAGTGCTTTCTTCTTAAGTTTAATAGTGTTTCAGTACATCTCGAGCTCTTCTAAGTGTTCACTAGTAATAATACGTTACACGGTGAGGTGATAGtcactatttattattacttatgaCCTGTATCTCGTTTTTCCACATTGATTTAAAGAGGATAATCTTGTACcatattgatattaaaatacagagaacaagaaaata

Function

GO:

id name namespace
GO:0034755 iron ion transmembrane transport biological_process
GO:0042541 hemoglobin biosynthetic process biological_process
GO:0046688 response to copper ion biological_process
GO:0035162 embryonic hemopoiesis biological_process
GO:0010039 response to iron ion biological_process
GO:0016020 membrane cellular_component
GO:0005381 iron ion transmembrane transporter activity molecular_function

KEGG:

id description
K21398 SLC11A2, DMT1, NRAMP2; natural resistance-associated macrophage protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115531 lncRNA upstream 402 424386 ~ 425078 (+) True G78089
TU115506 lncRNA upstream 14055 389034 ~ 411425 (+) False G78067
TU115523 lncRNA upstream 17076 405735 ~ 408404 (+) True G78081
TU115466 lncRNA upstream 20007 402445 ~ 405473 (+) True G78047
XR_006252044.1 lncRNA upstream 20510 403452 ~ 404970 (+) True LOC122353670
TU115777 lncRNA downstream 450734 889060 ~ 913799 (+) False atg7
TU115811 lncRNA downstream 596206 1034532 ~ 1040210 (+) False tsen2
XR_006252047.1 lncRNA downstream 632748 1071074 ~ 1074580 (+) True LOC122353680
TU115972 lncRNA downstream 756898 1195224 ~ 1195463 (+) True G78370
TU115991 lncRNA downstream 778898 1217224 ~ 1222835 (+) True G78380
XM_043251538.1 mRNA upstream 22072 397191 ~ 403408 (+) True si:ch211-159e12.5
XM_043252190.1 mRNA upstream 60311 351955 ~ 365169 (+) True LOC122354142
XM_043252191.1 mRNA upstream 60311 351955 ~ 365169 (+) False LOC122354142
XM_043252499.1 mRNA upstream 75038 348580 ~ 350442 (+) False LOC122354326
XM_043251865.1 mRNA upstream 143918 280680 ~ 281562 (+) True LOC122353958
XM_043252676.1 mRNA downstream 1894 440220 ~ 442079 (+) True npffl
XM_043251949.1 mRNA downstream 4627 442953 ~ 448514 (+) True alas1
XM_043251954.1 mRNA downstream 15236 453562 ~ 456072 (+) True LOC122354000
XM_043251952.1 mRNA downstream 18626 456952 ~ 493701 (+) False poc1a
XM_043251953.1 mRNA downstream 18630 456956 ~ 471355 (+) False poc1a
TU115526 other upstream 12727 412039 ~ 412753 (+) True G78084
TU115525 other upstream 14796 409333 ~ 410684 (+) True G78083
TU115515 other upstream 75041 348517 ~ 350439 (+) True LOC122354326
TU115474 other upstream 91084 333069 ~ 334396 (+) True G78055
TU115433 other upstream 360332 63019 ~ 65148 (+) True LOC122353551
TU115545 other downstream 149658 587984 ~ 595328 (+) False iars1
TU115544 other downstream 153002 591328 ~ 595328 (+) False iars1
XR_006252083.1 other downstream 164812 603138 ~ 706550 (+) False atp2b2
TU115925 other downstream 636418 1074744 ~ 1077399 (+) False cnbpb
TU115926 other downstream 636418 1074744 ~ 1077399 (+) False cnbpb

Expression Profile