RNA id: XM_043251980.1


Basic Information

Item Value
RNA id XM_043251980.1
length 4068
RNA type mRNA
GC content 0.56
exon number 34
gene id LOC122354020
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 69645 ~ 116501 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTCCGGCACCGCTCGCTGTTTCCGTCAGTTGCATCATTTCCGCTGTCTCTGCTCACCGGCGAGGGTCCGCATtggtCAGAATGGTGGAGGCGGTGCCAGAATCCATCCACTTCCCGTCGGAGGAGGACAGAATCCTGCAGCTCTGGCTGGACAAGGACTGTTTCCAGGAGTGTCTCAAACAGAGCAAGAACCGGCCGAGgtacACGTTCTACGACGGGCCTCCCTTCGCCACCGGTCTTCCTCACTATGGTCACATCCTGGCAGGGACCATCAAGGACGTCGTGTCGAGGTTCGCTCATCAGAACGGCTTCCACGTGGAGCGGCGCTTCGGCTGGGACTGTCACGGCCTGCCCGTGGAGTATGAGATTGATAAAGCGCTGAATATCAAAGGACCGGAGGATGTGGCTAAGATGGGCATAGCGGAGTACAACAAGCAGTGCAGGAGCATCGTCATGAGATACGCTGACGAGTGGGagATGTCTGTGAGACGGATGGGCCGCTGGATTGACTTCAGGAACGACTATAAGACTCTGTACCCGTGGTTCATGGAGACCGTgtggtgggTGTTCAAGCAGCTGTATGATAAGGGTCTGGTCTACAGAGGGGTGAAGGTCATGCCCTTCTCCACCGCCTGCAACACGCCCCTGTCTAACTTTGAGGCCAATCAGAACTACAagGATGTTCAGGACCCGTCTGTGATCGTCACCTTCCCTCTGCTGGAGGACGAGGAGGTCAGCTTCCTCGCCTGGACCACCACACCGTGGACCCTGCCCAGCAACCTGGCCCTCTGCGTCAACCCCGACCTCACCTACgtcagggtcaaagATAACAGCTCACACAAGATCTACATCATGATGGAGGCCAGACTCGTGGCTCTCTTCAAATCTGACTCGGAGTACACCATCCTGGACAAaTTTCCTGGCAAGACCCTGAAGGGCAAAAAATACAAGCCTCTGTTTGAGTACTTCATCAAGTGTCAGGAGACCGGAGCGTTCTCGGTGGTGATGGATAACTACGTGCGTGATGACGACGGCACAGGAGTGGTCCATCAGGCCCCTTACTTTGGAGCTGATGATTACCGCGTCTGCATGGACTATAAGATCATCCAGAGAGACTCTGCTCCCATCTGCCCCGTGGACTCCTCCGGCGTCTTCACTGCAGAGGTCACTCACTTCGCCGGTCAGTACGTGAAGGATGCAGACAAGAACATAATCAAGTGGCTGAAGGAGAATGGGCGTCTGGTGAGCTCCAGCTCGTTCAAGCACAGCTACCCTTTCTGCTGGAGGTCGGACACGCCGCTGATCTATAAAGCAGTGCCCAGCTGGTTTGTGAGGGTGGAGCACATGGTGGAGAAGCTTCTGGACAACAACAGCAAATGCTACTGGGTTCCTGAGTTCGTGAAAGAGAAGCGCTTTGGCAATTGGTTGAGGGATGCTCGAGACTGGGCGGTCTCTCGAAACCGTTACTGGGGGACGCCTATCCCGCTGTGGGTCAGCGACGATTACGAAGAGGTGGTGTGTGTGGGCTCCATGGCTGAGCTGGAGGAGCTGACAGGAACCAAAGTTTCTGATCTTCACAGAGAGAGCATTGACGGCCTGACCATCCCGTCCCGCTGTGGGAAGGGCCAGCTCAAGAGGGTCTCGGAGGTCTTTGACTGCTGGTTCGAGAGCGGCAGTATGCCCTACGCCCAGGTGCACTACCCGTTTGAGAACAGGCGGGAGTTTGAGGACGCCTTCCCAGCCGATTTCATCGCTGAGGGCATCGACCAGACCAGAGGATGGTTCTACACGCTGCTGGTTCTCTCCACCGCTCTGTTCGGGAAGCCTCCGTTCAAGAACGTGATTGTGAACGGCCTGGTTCTGGcgagTGACGGACAGAAAATGAGCAAGCGTAAGAAGAATTATCCTGACCCCGGCCTGATTGTGAAGAACTACGGCGCTGACGCGCTCCGACTGTATCTGATCAACTCCCCCGTGGTCCGCGCCGAGAACCTGCGCTTCAAAGAAGAAGGCGTTCGAGACGTGCTCAAAGACGTCTTCCTGCCCTGGTACAACGCCTACCGCTTCCTGGTGCAGAATGTCCAGAGACTGCAGAAGGAAGAGGCCATCGAGTTCCTGTACAACGAGAGCACGGCCAGCGTGAGCGACAACATCATGGATAAATGGATCCAGTCTTTCACTCAGTCCCTCATTCAGTTCTTCAGAGACGAGATGGGAGCCTACAGACTCTATACCGTGGTTCCCAAACTTGTCAAGTTCGTGGACATGCTCACCAACTGGTACGTGCGGACGAACCGCAGGCGGCTGAAGGGTGAGAGTGGTACTGAAGACTGCATGCGGGCCCTGGAGACCCTCTTCAGTGTGCTTTTCTCCATGTGCAGACTGATGGCTCCTTTCACGCCGTTCATAACGGAGCTGATGTACCAGAACCTGCGTCATCTGATCGACCCGGCGTCGGTGGAGGAGAAGGACGCGGGGAGCATCCACTACCTCATGCTGCCTCATGTCAGGTGCACAGACTCGATTGACAAGCGCATCGAGAGCGCCGTGTCTCGGATGCAGTCGGTCATCGAGCTGGGCCGTGTGATCCGGGACAGGAAGACTCTGCCGGTGAAGTACCCGCTGAAGGAGGTGGTGGTGATCCATCAGGACCCAGAGGCGCTCAGAGACATCCAGTCCCTGCAGAAGTACATCCTGGAGGAGCTGAATGTCCGCCAGCTCACTCTGTCCACTGACAAGGACAAATATGGCATTCGTCTGCGAGCTGAACCCGATCACATGGTGCTGGGCAAACGGCTGAAAGGGGCATTTAAATCCGTGACTGCTTCCATCAAAGAGCTGAAGAGTGAAGAGCTGGAGATCTTCCAGAGGACAGGGTCCATCGTGGTGGACGGTCACGAGCTGCTGGAGGACGACCTGCGTCTGATGTACAGCTTCGATCAGAGCTCAGGAACGCCGGCTCAGTACGAGGCTCACTCGGACGCTCAGGTGCTGGTTCTTCTGGACGTCACGCCCGATCAGGCCATGCAGGACGAGGGTGTGGCCCGAGAGGTCATCAACCGCATCCAGAAGCTGCGCAAGAAGGGTCACCTGGTCCCGTCGGATGAGATCACGGTGTATTACAGCAGTCAGCCGGCGGGAGAATACCTGGATAAAGTGATCCGAGCACACACTGACTTCATACTGGCCACCACTAAAGCTCCTCTCAAGCCCTATCCTGTGGCCCAGAGCTCCAGCGTGATCGTCCAGGAGAAAACACAGctcAAGGGCTCGGACCTGGACTTGACCATCGTTAGAGGGTCCGGCGTCTCCAGAGCGCCTCTGACCTCCGCCGCCTGCGCCTTCGTCAACCTCAGGGTCACTCTCAAGGACAAACAGCAAGAGGGGGTGATCCTGCTGGAGAACCCCAGGGGTGACGACACGCTGGACGTGGAGCGGCTCAAGAGCGTCTGCTGTAGTGTGTTCGGACTCAACGGTGCACCTGTGACCATATTCAGCGGGAGGACAGCGCTGACCGCTGGGACTGACCTGATGTCCCTGAGCGGGAAAACGCTGACGGTGACCTCGGGTTCGAGTCCCGCAGACGTGAGCGGCTCCGACCCTCCTCTGTGTCCGTATGTGAACCTGCAGCTCGTGAACGCCAGTCCAGCCGGTGCtgtcaGACCGGAAGTGGCCACGCTGCTCTTGATGAACCCAGCGGGGAAGAACGCCTTGCTCTTCCCGATCTGCTGCGAAGCGGCTAAAGTCTTCGGCCTGAGAGGAAGGAAGCTGCGGCTGTACCTGAACGAGGAGCTGACAGACGAGCTGGAGGCGTCTTCTCTGCACTCTCTGAACACCAAGACCCTCTACGTGAAGGTTCTTCCTACAACAGCAGAAGCTTAACCAGACCAGACCTGCGTCCTGATGAAGATCTGATCCGATCATGTTTGGTGTTTGTAATGGAAACAGGGAAGGTCAAATAACTCAGATTTCATGTATGTTGGTTGATCAAGTAAAGTTTATAACTGGATCTGTACTCTGTGGGTTTCTGTTGGGAAGCTTTGAATAAAACTTGAGATGCAGGTAAAA

Function

GO:

id name namespace
GO:0006428 isoleucyl-tRNA aminoacylation biological_process
GO:0006450 regulation of translational fidelity biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004822 isoleucine-tRNA ligase activity molecular_function
GO:0002161 aminoacyl-tRNA editing activity molecular_function

KEGG:

id description
K01870 IARS, ileS; isoleucyl-tRNA synthetase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115455 lncRNA downstream 44249 160750 ~ 303218 (+) False G78038
TU115456 lncRNA downstream 45961 162462 ~ 163750 (+) True G78038
TU115467 lncRNA downstream 52964 169465 ~ 254515 (+) True G78048
TU115471 lncRNA downstream 54884 171385 ~ 174473 (+) True G78052
TU115462 lncRNA downstream 63061 179562 ~ 321984 (+) True G78043
XM_043251325.1 mRNA upstream 4512 63006 ~ 65133 (+) False LOC122353551
XM_043251863.1 mRNA downstream 74405 190906 ~ 192857 (+) True LOC122353953
XM_043251865.1 mRNA downstream 164179 280680 ~ 281562 (+) True LOC122353958
XM_043252499.1 mRNA downstream 232079 348580 ~ 350442 (+) False LOC122354326
XM_043252190.1 mRNA downstream 235454 351955 ~ 365169 (+) True LOC122354142
XM_043252191.1 mRNA downstream 235454 351955 ~ 365169 (+) False LOC122354142
TU115433 other upstream 4497 63019 ~ 65148 (+) True LOC122353551
TU115474 other downstream 216568 333069 ~ 334396 (+) True G78055
TU115515 other downstream 232016 348517 ~ 350439 (+) True LOC122354326
TU115525 other downstream 292832 409333 ~ 410684 (+) True G78083
TU115526 other downstream 295538 412039 ~ 412753 (+) True G78084
TU115545 other downstream 471483 587984 ~ 595328 (+) False iars1

Expression Profile