RNA id: XM_043252191.1


Basic Information

Item Value
RNA id XM_043252191.1
length 2947
RNA type mRNA
GC content 0.49
exon number 26
gene id LOC122354142
representative False

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 351955 ~ 365169 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tACGCAGCGATCCTCGTTCCTCGACTTGGACAGATGTTCATAGAATACGATCATCCCTGGAAGAAACTGTCTGAGGAGTTTGGTCCTCACACCAAGTCCGTCACAGAGGCTCTCCTCACGCTGCTCCTGGTGTATCCTCGGAGGAATCTTTCTGCAGACCAGTGGCGCAGCGCTCAGCTCTTGTCTCTTCTGGCGTCTCCCGCCACCATGCTGAGCCCCGCGTGCTGCGACACCATGGCTTGTGAGTATCTGTCCATGGAGGTGATGGAGCGCTGGATCCTCATCGGCTTCATGTTGTGCCACAGCAGTCTAAATACCAATGCTAACTCTCAGACTTTATGGAAGATGGCCCTCCGTAACGGCCTGTACATCACAGTCATCAGAGACGAGGTTCTCAACATGCACAAGCTCTCGGAGGAGTTCTTCGACGGTCTCAAAGGATACAGTAAGCGCATCCCTGACATCAAAGAATGTAAAGAGTACGTCATCACTAACTGCGGGGCATTGCGGAGAGAGAAGCGTAACTTCCTGAGGAATGCCCTGAAGGAACTTACCAAGGTTTTGGAGGATGAACCTGCATTGCTCGGACCCAAGgctttgtttgtgttcatgGCGCTGTCGTTCTCTCGTGATGAAGTGCTCTGGCTTGTGCGTCATGCTGACAACATCCCCAAAACCAAGACCCCGGAGGACTATGCAGACTCACAGATGGCCGAGCTCCTCTACTACATGGAGAAGCTGCGCACTCTTTTGGCTCAACACAGATATGTTATACAACGCTACCATCTTCAGTACTTATCACAGTATGATGCTCTAGCACTGAACGACACCATTCAGGGTATGCACGTCTGTCCGGAGGAAGAATCGATTCTTATGTCTTCATTTGTCTCAACTCTGTCTGCAATGAGTCTCAAGCACTTGGACGCAGGAGAAGAGTTTGACCTGAAACCATTCAGACTGGACTGGTTTAGATTGCAGGCTTACACCAGTATTGGTAAAGCTCCTCTGGCGCTGAAGGACTACCCTGAGCTCGCCAAGGTCATGAACATGGCCCAGTTTCACACGAGGATGATGGACAATGTGAACGAACTCCTCTGTGAGACGGCTGATCTCTCTATCCTCTGTTTCCACTCGCGGGTGTTCGAGAAGCTGTTCTCTCAGAGCAGCGAGGACGTGTCCATGCAGCGCTACCTCACGGCTTTCCCCGTCATCTGTTCACACTTCAGTCAGTGTCTGCATCCGCTCTGTCCAGAAGAGACCGAGGAAACAGAGGCTCAAAGCCTGAGGCTGTGTGTGACCTTTCTGGAGGAGATTTCCCGTCTGACGTGTTCGGTTGTGCTGGAGATATGTGCTGAACAGTGCAACCTACATGAGAAGTTATTGCCTAAACACAGTGCAGAGACCATCAGTACAGCACGCAATAAAAAACTGAAGAAGTCATTACCAAAGAAAGGAGACATGCCGAAAGAGAAACCAGGGACGGAAAGCCTCCGAAAGGACAGAGTCATCGTCACAAATCTGGATAAGATGCACCTGGCTCTGACAGAACTGTGTGCTTCCTACAGTATCTGCGCTGATTTCAGCGTGTTCAAGCACATCCTTGTACCTGCTGAGTTCCTGCTCTCACAGCTGGAGATTAGACTCAACAAGGTTATTGTGCAGATGGCCAATTATAACCAGAGCACCCACGAAATCGCCCGGCCCTCGGAGCTGCTGGCTGGGATTCAGGCTTATGTTACCAGTCTGCAAAGCCTCAGCTGCTACATCAACATTGACGTCACGCGCCTGGTGAAGAGCGTCTTGTTGCAGCAGACGCAGCCGCTGGACTCGTATGGAGCACAGACCATCACAACGCTCTACACAAACTGGTTTCTGGAGGGTCTCTTGCGTCAGGCCAGCAGCGCTCTCATAGTCCACTGTCCTACCACACAGTGTTTTGTGAACCAGAACACTGAGAATGAGCAGAACTTTCGTGCTGAAGAATACTCCGACATTTGTGGTTTGCGATCGTTGGCTGAACTGATTGGTCCTTATGGACTGAAGTTTTTAAATGAGAACCTCATGTGGCACATCATATCCCAAGTTGGAGAACTAAAGAAACTCGTAAGTGACAACATGGATGTCCTCGTACAAATGAGAGCTAACTATGAGAAACCTGAAGCAATGAATGAACTTCAAAAGAAACTCACAGgtagtgaaaatgttttaaagagaatGACCATTATCGGCGTGATTCTGTCGTTCCGCTCCATGGTGCAAGACGCTCTTGAGGAGGTCATGGACAGACACTGCCCGTTTGTGATGAGACCCATCAGGTGTCTGAAGGACTTCATCTACCCTGACGGTGACATTAAGGTGTCACTCGGTGTGTATGAAATGGCTTCGGCGGCTGGTTTGCCGTGTGAGATCGACCCGGCGCTGGTTTCAGCCATCGCAAACATGCAGACAGACAACTCATCCACTGAGGAGGATTTCAAAATCACCTGCCTGCTGCTAGTTTTTATAGCCGTGTCTTTACCCACGCTGTGCCTGGATCCAAACTCCTTCTACAGCCGAGAACATGGAGGTCATCAAAACAACATTCATTGTCTGGCGACTGCAATAAATCACCTCGCGGCAGCCATGTTTACTGTCCAGAGAAAAAATATCCAGACTCAGCTTCAAGAGTTCCTGAAGGTGGCATCATCTATCTTGCTGCAGTTGGGTCAGAATGTGGAACGAGTGGAAATAAAGAACAGAGATTCAGTTTATCTTCTTCTACACATGACGGTGGAGCAGTCACCGTTCCTGAGTCAAGACATGCTGGAAACGTGTTTTCCATACGTACTCCTCAGAAACGCTTACAGAGAAGTGCACAAGATCTTCATCCGCACTATGGGctaaactttgtttttgtttttgtatatacaacccctggcaaaaagtatggaatcaccagtcttggacg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115487 lncRNA upstream 1011 350619 ~ 350944 (+) True G78061
TU115514 lncRNA upstream 12279 338836 ~ 339676 (+) True G78072
TU115464 lncRNA upstream 22933 184597 ~ 329022 (+) True G78045
TU115462 lncRNA upstream 29971 179562 ~ 321984 (+) True G78043
TU115467 lncRNA upstream 97440 169465 ~ 254515 (+) True G78048
TU115461 lncRNA downstream 2634 367803 ~ 372991 (+) True LOC122354311
XR_006252102.1 lncRNA downstream 7257 372426 ~ 373639 (+) False LOC122354311
TU115500 lncRNA downstream 20753 385922 ~ 389002 (+) False G78067
TU115501 lncRNA downstream 20753 385922 ~ 390781 (+) True G78067
TU115506 lncRNA downstream 23865 389034 ~ 411425 (+) False G78067
XM_043252499.1 mRNA upstream 1513 348580 ~ 350442 (+) False LOC122354326
XM_043251865.1 mRNA upstream 70393 280680 ~ 281562 (+) True LOC122353958
XM_043251863.1 mRNA upstream 159098 190906 ~ 192857 (+) True LOC122353953
XM_043251980.1 mRNA upstream 235454 69645 ~ 116501 (+) True LOC122354020
XM_043251327.1 mRNA upstream 286822 63092 ~ 65133 (+) False LOC122353551
XM_043251538.1 mRNA downstream 32022 397191 ~ 403408 (+) True si:ch211-159e12.5
XM_043251539.1 mRNA downstream 60311 425480 ~ 438326 (+) True slc11a2
XM_043252676.1 mRNA downstream 75051 440220 ~ 442079 (+) True npffl
XM_043251949.1 mRNA downstream 77784 442953 ~ 448514 (+) True alas1
XM_043251954.1 mRNA downstream 88393 453562 ~ 456072 (+) True LOC122354000
TU115515 other upstream 1516 348517 ~ 350439 (+) True LOC122354326
TU115474 other upstream 17559 333069 ~ 334396 (+) True G78055
TU115433 other upstream 286807 63019 ~ 65148 (+) True LOC122353551
TU115525 other downstream 44164 409333 ~ 410684 (+) True G78083
TU115526 other downstream 46870 412039 ~ 412753 (+) True G78084
TU115545 other downstream 222815 587984 ~ 595328 (+) False iars1
TU115544 other downstream 226159 591328 ~ 595328 (+) False iars1
XR_006252083.1 other downstream 237969 603138 ~ 706550 (+) False atp2b2

Expression Profile