RNA id: XM_043252605.1


Basic Information

Item Value
RNA id XM_043252605.1
length 2475
RNA type mRNA
GC content 0.49
exon number 11
gene id isy1
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 1077539 ~ 1083253 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCTGCACGCGCGTAAGGTCAAAGAGGCCTCTGAAAGTAGAGACCTGGCAGTTGCTCGAAGGCCTCTTTTAGTTGACTGCGATGTCTATTCAGAGCCGGAGTGTGAGGAGAGTAAGACTAGAGCTCCACGCAGCAGCTGGTCGGCCAGGAATCTGACGAACCGGAACGCAAGGAATGAATCCCTTCGGTTAATTATTCAACCACGCCGTCTCAGTATATGGCACTGTGCGTAAACCCTCAACGAGTCCTCCTGCGAGAAGAAGTGCGAGGGCTGATGTCATGGGACTGATGCAGCATGTAGAAACGTTATTTTTAGGTCTGTTGAAGCCGAATGAGATGACTCCTGGCGGCCCTGACATTACTTCGCTCTCGGGTTACTGTGGATCAATAAGAGCAGAGCTAAGCATAGCTGCAGTGTAACTGGAGACGGGCTCCGATCTTCAGCTTCTGACGGCTGTGTGTTCAATGAACGGCGTCTCCATGATTCAGGCCTTCAGGCAGGTTCCTGCTGGCAGACGTGTTCGAGTTAATGATCACCGTTTCTGACTCTGTGGTGAAGTCTCACGAGTGCCTTGACCTTGTGTGAAGCTGTGGTAATGCCAAAATGTTCAGGGATAGAGGGACTGCTGGGTTCTCTAGGTGTTTCAGGGAAGGACCTAACAGATTCACACAGCGGACTTGACCGCTTCGGCGAAAGAAACGGTGAGTGTGTTTAGTGGAGGAAAAAAGATGTGTGAGCAAAGCTCAGGCGAAGCTCTTCAACAAACACTCGAGACAAAACATGTTTCAGTtatcacacattttaaaaaataccacTGTTCCTGTTTGAAAGGCCTGGATGAGGCCAGCTGCACTTACATGATCACAGGTTTATATTTGGTCGAAAGGGCAAGCTTTTCTGACTTTAGCTGTACAATCTGTACAAAGAAATTATGTATGAAACCTATGTTTTTGTGCTCTTAAACGATTCACGTTTTTCCCTCCGAATAAACGTTTTCAATGGATCTGTGACACTGTCATGGCGGAGAAGTTTTATCTCTCTCCACTAGATGGTACACACACCGTTTGCTCTCTTCCGGTCACTCTTGATCTCACGATCATCTCAACGGCGTTTCAAAGTAATACTAGTTAAAAGTTAGCGCAATGagcgtaaataaataaaccttcgATGTATTTATCGTTACCAGGCACGTATATATATTTACGATCAGGCCCAGCGTTTGTTTGCTCCGTCATCGTTTGGCGCGCCGGAAGTTGTTCGGCGTAGCAGCACGTCATCTTCGTGCGTCGCGCGCGCTCTCCGTTGGGCTCACGCAGGATCGACCGTCTGAACTACAAGCATGGCTCGAAATGCAGAAAAGGCCATGACGGCCCTGGCCAGGTTTCGTCAAGCCCAGCTCGAAGAGGGAAAGGTTAAGGAGAGAAGACCTTTCCTGGCTTCGGAGTGCAATGAGTTACCCAAAGCGGAGAAGTGGAGGAGACAGATCATCAGTGAGATCTCAAAGAAGGTGGCGCAGATTCAAAACGCTGGTTTGGGTGAATTTAAGATTCGTGATCTGAACGATGAAATCAACAAACTGCTCCGAGAGAAAGGACACTGGGAAGTCCGGATCAAGGAGCTGGGAGGACCTGACTACAGGAGAGTGGGGCCGAAGATGTTGGACCATGAGGGTAAAGAGGTACCAGGAAACAGAGGATACAAGTATTTCGGTGCAGCGAAAGACTTACCAGGAGTCCGAGAGCTGTTCGAGAAAGAGCCTATACCACCTCCCAGAAAAACCCGAGCTGAGCTGATGAAGGACATTGACGCCGACTATTACGGCTATAGAGATGAAGACGATGGGGTTTTAGTACCGCTGGAGCAGGAATACGAGAAACAAGTCATAGCAGAGGCCGTGGAGAAATGGAAAGCAGACAAAGAGGCTCGGCTAGCTGCTGGCGGGGGCGCGAAAGAcgccgaggaggaggaggaatacATCTACGCCGTCGGAAACGAAGAGTCTGATGACGAAGCGGGAGAACCGATGGAGGGAGAAGACGGCTCGCAGTCCTTCATCGCCCACGTGCCCGTTCCCACGCAGAAGGAGATTGAGGAGGCCCTGGTGAGACGGAAGAAAATGGAGCTGCTGCAGAAATACGCCAGTGAGAGTTTGATGGCTCAGAGCGAAGAGGCCAAAGCTTTGCTGGGTTTATagagggatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcagtttcACACAGACATGAATCTTAATGTAAAGGTGAGGCTCATGCACACAAAAGACGAAAATATTGGTCCAGTTTAACTTGACATTAAAAGACATCGTCGTGTGAGCTGTTTTTTGCAAGTTGCCTCCCTACTACTTTTGTTCGTCCTTCATTTTGTGGACCCGTGAAAGAACTGCAGCgctgtaaatattttgtatactgTGTTCCCTCTGACaaataaactgcttttttttcttttacagaa

Function

GO: NA

KEGG:

id description
K12870 ISY1; pre-mRNA-splicing factor ISY1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252047.1 lncRNA upstream 2959 1071074 ~ 1074580 (+) True LOC122353680
TU115811 lncRNA upstream 37329 1034532 ~ 1040210 (+) False tsen2
TU115777 lncRNA upstream 163740 889060 ~ 913799 (+) False atg7
TU115531 lncRNA upstream 652461 424386 ~ 425078 (+) True G78089
TU115523 lncRNA upstream 669135 405735 ~ 408404 (+) True G78081
TU115972 lncRNA downstream 111971 1195224 ~ 1195463 (+) True G78370
TU115991 lncRNA downstream 133971 1217224 ~ 1222835 (+) True G78380
TU116026 lncRNA downstream 193262 1276515 ~ 1277127 (+) True G78400
TU116101 lncRNA downstream 337091 1420344 ~ 1421787 (+) False rbms2a
TU116102 lncRNA downstream 339480 1422733 ~ 1425764 (+) True G78455
XM_043252501.1 mRNA upstream 150 1074707 ~ 1077389 (+) True cnbpb
XM_043252078.1 mRNA upstream 23671 1046350 ~ 1053868 (+) True mkrn2
XM_043251268.1 mRNA upstream 37300 1034413 ~ 1040239 (+) True tsen2
XM_043251269.1 mRNA upstream 37420 1034409 ~ 1040119 (+) False tsen2
XM_043252603.1 mRNA downstream 718 1083971 ~ 1093073 (+) True zgc:77375
XM_043251517.1 mRNA downstream 15240 1098493 ~ 1105706 (+) True nuf2
XM_043251515.1 mRNA downstream 15311 1098564 ~ 1105706 (+) False nuf2
XM_043251514.1 mRNA downstream 15352 1098605 ~ 1105706 (+) False nuf2
XM_043251513.1 mRNA downstream 15363 1098616 ~ 1105706 (+) False nuf2
TU115925 other upstream 140 1074744 ~ 1077399 (+) False cnbpb
TU115926 other upstream 140 1074744 ~ 1077399 (+) False cnbpb
XR_006252083.1 other upstream 370989 603138 ~ 706550 (+) False atp2b2
TU115545 other upstream 482211 587984 ~ 595328 (+) False iars1
TU115544 other upstream 482211 591328 ~ 595328 (+) False iars1
TU115960 other downstream 103613 1186866 ~ 1191721 (+) True LOC122353696
TU116128 other downstream 402454 1485707 ~ 1510874 (+) False rargb
TU116164 other downstream 507491 1590744 ~ 1593125 (+) True G78500
TU116178 other downstream 561378 1644631 ~ 1726097 (+) True G78506
TU116166 other downstream 594984 1678237 ~ 1680177 (+) False nabp2

Expression Profile