RNA id: XR_006252044.1


Basic Information

Item Value
RNA id XR_006252044.1
length 383
lncRNA type inter_gene
GC content 0.65
exon number 3
gene id LOC122353670
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 403452 ~ 404970 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCACGAAGTCCCAGCCGGAGGAGAAGCGGCGGTGGTCCAGGCCCCAGGACAGAGCTGACACGGCAGGGGCCCCTGAGGGCCATCCTGAGAGAGGCACGTTCCCCGCAATGTTCCTCTCGATCTGAGAGACGGCCGAAGAGACGTCTACTCAGGAGGAAGAGCCAATGAGTGCCGTTGTGGGGCGTGGTCACGTTAGCCACGCCCGCTTCTGCAGGCCGGGGGCGGGGTTTAACGCCACGTGAGCGCAATCCCAGACGGACGCGGACACGCCCAGCCTCGCGCTGTAATCCTGCCGGATCCGGAAGTCCAGCCCGTGGACTCTGTAGGTGTTTTCTGCGCCGAACGTCTCCTCGAACAGACCGTCTTCTGCGGGGAACACGTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115501 lncRNA upstream 12671 385922 ~ 390781 (+) True G78067
TU115500 lncRNA upstream 14450 385922 ~ 389002 (+) False G78067
XR_006252102.1 lncRNA upstream 29813 372426 ~ 373639 (+) False LOC122354311
TU115461 lncRNA upstream 30461 367803 ~ 372991 (+) True LOC122354311
TU115487 lncRNA upstream 52508 350619 ~ 350944 (+) True G78061
TU115523 lncRNA downstream 765 405735 ~ 408404 (+) True G78081
TU115531 lncRNA downstream 19416 424386 ~ 425078 (+) True G78089
TU115777 lncRNA downstream 484090 889060 ~ 913799 (+) False atg7
TU115811 lncRNA downstream 629562 1034532 ~ 1040210 (+) False tsen2
XR_006252047.1 lncRNA downstream 666104 1071074 ~ 1074580 (+) True LOC122353680
XM_043251538.1 mRNA upstream 44 397191 ~ 403408 (+) True si:ch211-159e12.5
XM_043252190.1 mRNA upstream 38283 351955 ~ 365169 (+) True LOC122354142
XM_043252191.1 mRNA upstream 38283 351955 ~ 365169 (+) False LOC122354142
XM_043252499.1 mRNA upstream 53010 348580 ~ 350442 (+) False LOC122354326
XM_043251865.1 mRNA upstream 121890 280680 ~ 281562 (+) True LOC122353958
XM_043251539.1 mRNA downstream 20510 425480 ~ 438326 (+) True slc11a2
XM_043252676.1 mRNA downstream 35250 440220 ~ 442079 (+) True npffl
XM_043251949.1 mRNA downstream 37983 442953 ~ 448514 (+) True alas1
XM_043251954.1 mRNA downstream 48592 453562 ~ 456072 (+) True LOC122354000
XM_043251952.1 mRNA downstream 51982 456952 ~ 493701 (+) False poc1a
TU115515 other upstream 53013 348517 ~ 350439 (+) True LOC122354326
TU115474 other upstream 69056 333069 ~ 334396 (+) True G78055
TU115433 other upstream 338304 63019 ~ 65148 (+) True LOC122353551
TU115525 other downstream 4363 409333 ~ 410684 (+) True G78083
TU115526 other downstream 7069 412039 ~ 412753 (+) True G78084
TU115545 other downstream 183014 587984 ~ 595328 (+) False iars1
TU115544 other downstream 186358 591328 ~ 595328 (+) False iars1
XR_006252083.1 other downstream 198168 603138 ~ 706550 (+) False atp2b2

Expression Profile