RNA id: TU12266


Basic Information

Item Value
RNA id TU12266
length 693
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id LOC122325207
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 248481 ~ 256886 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGTTGCTTGCGCTTCTTATGAAATCTTGAACTATCCGATGCACAAGTCCAAAGGTCTTCTCGAGTAATTCTTTGTAGGGTTTGCTGCGCGCGCAACGGCAAGCGCGCGCTGAAAACCAAAgtttaaaaaccaaaacttAAGCGCTACCTCTTCGCAAACCcgcgcttctttttttttttttttttttaccgttttgaaaaatgttatctAAAAAGAACCGTGGGTGTTTTGAAATGGGGAAAGCGCGAGGCTTACGCGGCGGCGTACCCCAATGTTCCAGACTGGGTCCTGAACTTTTCTCCGCTGCCTTCCCTTTCTTCTCCCCGTAGGAATCTTTCTGCATTCCCGGCGGCCCAAAGCGAACATCTGCACCAGAAGATGACCGAAAACGGAGCGTTACCCCTTCGGGGGAAAGTGCTCACCGTTGACACCATGAACGCCAACGTCAAAAAGGTGGACTACGCGGTTCGCGGACTGATCGTTCAGCGCGCGGTTCAGATCGAGAAGGAGCTGAAAGAGataCTCGCATGCaaactctctgtctcttctgaTTTTATGGACCAAAAACATTGATGAATCAACAGGATTTTTCCAATCAGATGCTTGCTAGAGCGAGAATGTCCCTCCCAAAATTTCCTGCAACTAACTAGCAAGTAACCCTTCATTATGTCCTGCTGTTTCAATAGGAACTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12260 lncRNA upstream 3396 241540 ~ 245364 (+) False LOC122325097
TU12237 lncRNA upstream 25393 203646 ~ 223367 (+) False G8167
TU12238 lncRNA upstream 26616 203646 ~ 222144 (+) False G8167
TU12244 lncRNA upstream 26616 203646 ~ 222144 (+) False G8167
TU12242 lncRNA upstream 26616 214409 ~ 222144 (+) False G8167
TU12308 lncRNA downstream 235801 487780 ~ 515969 (+) True G8207
TU12311 lncRNA downstream 313917 565896 ~ 566914 (+) True G8209
TU12185 lncRNA downstream 319050 571029 ~ 603945 (+) False G8151
TU12188 lncRNA downstream 319050 571029 ~ 603945 (+) True G8151
TU12316 lncRNA downstream 331383 583362 ~ 584348 (+) True G8213
XM_043219987.1 mRNA upstream 4038 241451 ~ 244722 (+) True LOC122325097
XM_043220121.1 mRNA upstream 8364 238742 ~ 240396 (+) True LOC122325174
XM_043219963.1 mRNA upstream 15350 224016 ~ 233410 (+) True LOC122325083
XM_043219950.1 mRNA upstream 73752 171622 ~ 175008 (+) True wu:fi34b01
XM_043261606.1 mRNA downstream 195271 447250 ~ 457745 (+) True LOC122360757
XM_043220006.1 mRNA downstream 308000 559979 ~ 564990 (+) True LOC122325106
XM_043219998.1 mRNA downstream 308241 560220 ~ 564990 (+) False LOC122325106
XM_043220072.1 mRNA downstream 353107 605086 ~ 609167 (+) True LOC122325155
XM_043254654.1 mRNA downstream 397005 648984 ~ 654781 (+) True zgc:153615
TU12243 other upstream 25717 200092 ~ 223043 (+) True G8167
TU12282 other downstream 195183 447162 ~ 450019 (+) False LOC122360757
TU12283 other downstream 195183 447162 ~ 450019 (+) False LOC122360757
TU12491 other downstream 547953 799932 ~ 828209 (+) False st6galnac5a
XR_006252350.1 other downstream 1292794 1544773 ~ 1554114 (+) False rc3h1b
XR_006252584.1 other downstream 1926787 2178766 ~ 2189365 (+) True LOC122358138

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU26317 True 1379 lncRNA 0.40 2 CI01000003 1843088 ~ 1849069 (+)
eurasian perch (Perca fluviatilis) TU26317 False 7501 lncRNA 0.45 2 NC_053113.1 24314587 ~ 24322367 (-)