RNA id: XM_043261606.1


Basic Information

Item Value
RNA id XM_043261606.1
length 2915
RNA type mRNA
GC content 0.46
exon number 17
gene id LOC122360757
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 447162 ~ 457745 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCCCACCAGGAAATCACAGGTTAGTGTGTGCAATGCGGAATGAAAACGTCCTTCTAAACCAGGAGAAAGCAGCAACAATGAGGGTCTGGTCAGCGCTGCGGCGTGGAATtgaaaagctgtgtttgtggaTGAGTCCCGCTGATCTGCAGAACTGAACGGAAGTCCTGCTCCGGCTGTCCCCGGGATCTGATGTGAGAGCGTCTGCAGGAGCGAGGGGGCGGAGCTGAGATGTCAATCAGAAGCGCCGAGGGCGTGTCCATCATGCAGGCCTTAGCCATGACCGTGGCTGAGATACCTGTGTTCCTGTACTCCACCTTTGGACAGTCTATCTTCTCTCAGCTGAAGTTGAGCCCTAGTCTAAAGAAGGTGCTGTTCGCCACGGCTCTGGGCAGCGTCGCTCTGGCTCTGACCGCTCATCAGTTAAAGAGACGGGGCAGAAAGAGGAAACAGGCAGTCAGTAAAGAAGCACAGAAACCTGTGGGCATCCCAGAACAGCTGCTCCGAACCAGTCGGCCGGCCTCACTCAAGAGAGGTCTGGTTCCAGGGCGTCAGATGATCAGTCCCAGCACCCGTAGTAATGACACTCTGAGCGGCGTTTCGTCTCTCGCACAGAGCAAACACTCGAGCTCTTCACACAGTATCGCCTCTATGCGAGTTCCCTCCTCTCCCAACCAATCAGTGAACACCGGGACGCCGTGGGAGGCGGAGCCAGTGGCAGAGGAGCCTGGAGTTGGAGAGGATGCCAATGCTGAGAACCTCTAtctcatgggtaatgtagtttattATAGTgatctgttgtgtgtgtgtttttgtttttgtcccccAGAGTCTGAGTGTCTAAATCTGCttttaaactcaaagaactgcTACACGTGTAATGTGGTGTCCAATGGTAGTCTGTTCAGCAAGCTTTCCAGCTCCCTGCCTAGCCTGGCCTCCATGAGGAGCAGGCACTCCTCCAGTAGCTCCACCTGCGCTAACGACTCCAGTTGTTGGGATGGAGCAGGAGACGACGGCGAAATCTGTAGCCTGCTCAACATCCCCGTTACCACTCCAGAGAACCTCTACCTGATGGGAATGGAGTTGTTTGAGGAAGCCCTGCGGCGCTGGGAACAGGCTCTAACGTTCCGCAGCAGGCAAACAGAAGATGATGAGAACTATGCGTCTGTGAAACTGGGAGCTGGAGATGCCATTGCAGAAGAAAGCATGGAGgatATAATCAGTGTAGAATTCATCAGAAAGCTGGAGTCCCTGCTACAGAGAGCCTATCGGCTCCAGGAAGAATTTGAGGGAGCTCTGGGGATGACAGAACCTTCAACACATCCTAATAATGATAAGCACATGGATCTCTCCGTGCGGGAGGACTTGGAGGACACCTGTCTGAGGGATTCAATCAGCATCGCCTCAACGGATTCCTTCGTCTCTGCCGCAGAGTTATCAGAGCACAGAGAGATGAGGAGTGCCCATGTGCTGGGGTCATTGTGTCATCATCTTTTCTATGAGGATGCCCTGCAGATGGCAGAGGAAGGGAAGATCTCCTGTCGAGTGTTACGAACAGCAAGGGTGAAACTTTATAGATACACATCATGTGTGGGGAAAAACTTATATTGTATTTCAATTCAGGTCATCTTATGTGAAAGAGCAACTAGAGCATTCCTGGCTGACATAGGAAAGAGGATATTATCTTCAATAATTGTTAAAGCAAGGAAGAGCCCAAAGAGATTTGAGGAGGTGTTTGAAGAAATGATCTGCTTTCTGGAGCAAACAGACCATTGGGAGAACACAGAAATTGAGCTTTCTGCAAGAGGGgTTAAACATTTGAACTTCTTTGACATTGTTCTTGACTTCATCCTCATGGACTCGTTTGAGGATCTTGAGAATCCACCTATTTCTATTCAAAATGTGGTCAACAATCGATGGCTCAACAACTCCTTCAAAGAGACCGCCGTTGCATCAAGTTGTTGGTCTGTTCTGAAGCAGAAGAGGCAACATATGAAGGTTCCAGATGGCTTCATTGCCCATTTCTATGCAGTGTGTGAACACATAAGTCCCGTCTTGGCCTGGGGGTTTCTAGGCCCTAAAAGTTCCCTGAACGATTTCTGCTGCTTCTTCAAGGAGCAGGTGCTATTCTTCATGAAGGACATTTTTGATCTGGATAAAGTGCGTTACTCTAGTCTGGACACTCTGGCTGAGGACATATTGCACCTGCTTCACAGACGTTCGGAGCTGCTTCTTGCCTATGTAGGCACCGATATCATCTGTCACCTAAATGGCTGTAGTGGCACACCTTTGCATCTGCTACCAAGTGCTTTGCTGGAGGCACAGGTTCAGTGAGCTACATCCGTCTCATCCTCCACATTATGACTCGTCTTCCAAGTCATTATTAGTGCCATGTTAATGCAGTATAGTCTGTCGTTATTTAAATGAAGCAGGTAAAAAGGgacaatgtattttaatatgccTTTCATGTGGTGTTccagtagcttttttttttttactttaaaaaagatttGCACAACAAATGACTTTTTGGGGTccttgatgttttaaaaattgaaaGCTTTCACTGTTGTATTTTCATAGTTCTGACAAAAAGGATGTTATTCGTAAGAGATTAAGTCACATGTAGGTCACTTAGTCAAAACTTTTTATAGGAATTAAATGTTCAACACTGGCCATGAATTCAATTTAGACTTCTTTACTCTTGTTGATGCTGTTAATTATGTTGAACAGCTGGCTGTTatgaatttaaatcatttcatcaACTACTACAAATCGTACTTGTGACAAAGTTCAAACATTTGATGTATTCTGTAACGATGTGGAGTTGAAGCTGTATTGTTAAGCCAGTATTAAGCCTGTATTAGTTGAACACTGAAATCACTaagtgacaaaataaaaatcttaaagcCAA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247265.1 lncRNA upstream 190364 248481 ~ 256886 (+) False LOC122325207
TU12266 lncRNA upstream 195271 248760 ~ 251979 (+) True LOC122325207
TU12260 lncRNA upstream 201886 241540 ~ 245364 (+) False LOC122325097
TU12237 lncRNA upstream 223883 203646 ~ 223367 (+) False G8167
TU12238 lncRNA upstream 225106 203646 ~ 222144 (+) False G8167
TU12308 lncRNA downstream 30035 487780 ~ 515969 (+) True G8207
TU12311 lncRNA downstream 108151 565896 ~ 566914 (+) True G8209
TU12185 lncRNA downstream 113284 571029 ~ 603945 (+) False G8151
TU12188 lncRNA downstream 113284 571029 ~ 603945 (+) True G8151
TU12316 lncRNA downstream 125617 583362 ~ 584348 (+) True G8213
XM_043219987.1 mRNA upstream 202528 241451 ~ 244722 (+) True LOC122325097
XM_043220121.1 mRNA upstream 206854 238742 ~ 240396 (+) True LOC122325174
XM_043219963.1 mRNA upstream 213840 224016 ~ 233410 (+) True LOC122325083
XM_043219950.1 mRNA upstream 272242 171622 ~ 175008 (+) True wu:fi34b01
XM_043220006.1 mRNA downstream 102234 559979 ~ 564990 (+) True LOC122325106
XM_043219998.1 mRNA downstream 102475 560220 ~ 564990 (+) False LOC122325106
XM_043220072.1 mRNA downstream 147341 605086 ~ 609167 (+) True LOC122325155
XM_043254654.1 mRNA downstream 191239 648984 ~ 654781 (+) True zgc:153615
XM_043222082.1 mRNA downstream 201012 658757 ~ 662000 (+) True zmp:0000001127
TU12243 other upstream 224207 200092 ~ 223043 (+) True G8167
TU12491 other downstream 342187 799932 ~ 828209 (+) False st6galnac5a
XR_006252350.1 other downstream 1087028 1544773 ~ 1554114 (+) False rc3h1b
XR_006252584.1 other downstream 1721021 2178766 ~ 2189365 (+) True LOC122358138
XR_006252583.1 other downstream 1721021 2178766 ~ 2189365 (+) False LOC122358138
TU13065 other downstream 1812936 2270681 ~ 2275135 (+) False sgip1b

Expression Profile