RNA id: TU12450


Basic Information

Item Value
RNA id TU12450
length 520
lncRNA type inter_gene
GC content 0.51
exon number 3
gene id G8280
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 620427 ~ 637790 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAAAGTCCACAAATTGAAGTGCAAAGGGGTATTTTTCATACAGTACAGAGCTGGGAGGTACATATTGCTGGGGTGGCACATCAGGCTGGTTGGCAGAGGGCCAGCATTCAGCAGCTGCAGTTGTAGTACAGGGTTGAGGAGTAGTGGTTACAGGCTGTGCAGTGGGAGGAGACTGAACTGGGTATTTTGGATAAGAGCCTTGCAAAGGAGGATTTCCATCTGGTCCTTGGCCACCTGGTCCAGTGTCAGAGCCTGAGGACGGAACAAGGTTTGGGTCACCAAAAGGGTAGCCAGGATAGCCATAGGGCCAAGGCAGCTGGGGGTATTTGGGacgttgaggctttccatctggtccAGTGTCAGAGCCTGAGGACGGAACAAGGTTTGGGTCACCAAAAGGGTAGCCAGGATAGCCATAGGGCCAAGGCAGCTGGGGGTATTTGGGACGTTGAGGCTTGACTtgtcccggcacttggactcccggcacttggactcccggcacttggactcccggcacttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12337 lncRNA downstream 16487 571029 ~ 603940 (-) False LOC122325167
TU12338 lncRNA downstream 16487 571029 ~ 603940 (-) False LOC122325167
TU12339 lncRNA downstream 16487 571029 ~ 603940 (-) True LOC122325167
TU12432 lncRNA downstream 68725 548034 ~ 551702 (-) True G8273
XR_006247269.1 lncRNA downstream 216605 398126 ~ 403822 (-) True LOC122325225
TU12444 lncRNA upstream 5358 634849 ~ 635841 (-) False G8279
TU12449 lncRNA upstream 7605 637096 ~ 637790 (-) False G8280
TU12474 lncRNA upstream 64089 693580 ~ 694370 (-) True G8296
TU12488 lncRNA upstream 144768 774259 ~ 776958 (-) True G8309
TU12565 lncRNA upstream 368878 998369 ~ 999161 (-) True G8375
XM_043220108.1 mRNA downstream 16483 601914 ~ 603944 (-) False LOC122325167
XM_043219978.1 mRNA downstream 19193 597212 ~ 601234 (-) True LOC122325090
XM_043219924.1 mRNA downstream 26206 579773 ~ 594221 (-) True LOC122325065
XM_043220030.1 mRNA downstream 53627 564663 ~ 566800 (-) True LOC122325126
XM_043219876.1 mRNA downstream 104703 468596 ~ 515724 (-) True LOC122325042
XM_043254365.1 mRNA upstream 38809 668300 ~ 680383 (-) True gipc2
XM_043254355.1 mRNA upstream 51184 680675 ~ 685013 (-) True dnajb4
XM_043261618.1 mRNA upstream 213724 843215 ~ 875227 (-) True pigk
XM_043257317.1 mRNA upstream 324225 953716 ~ 973343 (-) False zzz3
XM_043257300.1 mRNA upstream 324225 953716 ~ 973343 (-) False zzz3
TU12372 other downstream 396493 198628 ~ 223934 (-) False G8237
TU12376 other downstream 397282 214738 ~ 223145 (-) False G8237
TU12374 other downstream 468797 142744 ~ 151630 (-) False G8237
XR_006246996.1 other upstream 550454 1179945 ~ 1202987 (-) False dipk2aa
XR_006247871.1 other upstream 754217 1383708 ~ 1383784 (-) True LOC122328985
XR_006247866.1 other upstream 754599 1384090 ~ 1384275 (-) True LOC122328960
XR_006247864.1 other upstream 755206 1384697 ~ 1384875 (-) True LOC122328955
XR_006247870.1 other upstream 755606 1385097 ~ 1385166 (-) True LOC122328981