RNA id: TU12491



Basic Information


Item Value
RNA id TU12491
length 994
RNA type TUCP
GC content 0.55
exon number 5
gene id st6galnac5a
representative False

Chromosome Information


Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 799932 ~ 828405 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ACGTTCTCCCTCCGCTCGCCGCTCTCAAGAATGGGTTCAGTCCGCGCGCACGGCACACACACTGCCATCTCTCAGCGCGAGCGGAGCGCGGCAATTTAATGACGACATAATCTGATGAAGTAGCAGCAATCGGGGAAAAAAGTGGATCTTCATGCGCACATCCCCGGGAATATTCCAGCTGGCTTCAGGATGAAGACACCGATGCGCCATGGAGTAGCCGTGTTTCTCGCGATCACCATGTGCACCAGTCTGTTGTTCGTGTACAGCGTCGGCTACAATAATACTACAGCGTCCGGCTCGTCTAAGGGCGCGTCAGGTGAAAAAGTGGAGCCCACCAGTGCGCCCCGCGCGCTTCCAGCACTGCAGGGATACAGCAGCATCATTGAGCACAAGCCTCTAAAGATGCACTGCGGGAGCTGCGCGCTGGTCACCAGCTCGGGTCATCTAACCGGTGGGGGTCGCGGAAAAGAGATCGATCAGGCGGAGTGCGTCATTCGAATGAATGACGCGCCCACGGCCCGTGGCTACGGGGTGGACGTGGGTCACCGCACGAGCCTGAGGGTCATCGCTCATTCCAGCATGCAGAGAGTTCTGCGCAGCCGCCACGAACTCCTCAACTCCAGTCAGGACACGGTCTTCATCTTCTGGGGACCCAGCAGTTATATGAGAAGGGATGGGAAAGGCCTGGTTTATAACAACCTGCGGCTTATGAACCAAGTGCTGCCTAAACTCAAGGTCTATATCATCTCCTGGCAGAAAATGCTCCAGTTTGATGACCTATTCAAGAGAGAGACCGGCAAAGACAGGAGAATCTCTAACTCGTGGTTAAGCACAGGCTGGTTCACAATGACGATTGCCTTAGAGCTCTGTGACAGAATCAATGTATACGGCATGGTGCCTCCGGATTTCTGTAGGGAGTCTCAGCACCCCTCCGTCCCATATCACTACTACGAACCGGACGAGTCCGGACGAATGTGCCATGTACATCTCCCAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU12330 lncRNA upstream 17187 680687 ~ 782745 (+) True G8222
TU12329 lncRNA upstream 115739 680687 ~ 684193 (+) False G8222
TU12262 lncRNA upstream 128369 668304 ~ 671563 (+) True G8173
XR_006247819.1 lncRNA upstream 155006 643034 ~ 644926 (+) True LOC122328698
XR_006247267.1 lncRNA upstream 165166 634151 ~ 634766 (+) True LOC122325219
TU12606 lncRNA downstream 351921 1180130 ~ 1186032 (+) True G8394
TU12596 lncRNA downstream 369218 1197427 ~ 1203014 (+) True G8393
TU12676 lncRNA downstream 553910 1382119 ~ 1382323 (+) True G8451
TU12674 lncRNA downstream 555683 1383892 ~ 1385986 (+) True G8449
TU12694 lncRNA downstream 578779 1406988 ~ 1408710 (+) False ccdc39
XM_043224288.1 mRNA upstream 23132 706551 ~ 776800 (+) True st6galnac3
XM_043224296.1 mRNA upstream 23132 706551 ~ 776800 (+) False st6galnac3
XM_043224778.1 mRNA upstream 103268 693217 ~ 696664 (+) True cope
XM_043224784.1 mRNA upstream 103268 693235 ~ 696664 (+) False cope
XM_043254347.1 mRNA upstream 107094 685223 ~ 692838 (+) True slc25a24l
XM_043257429.1 mRNA downstream 47549 875758 ~ 952394 (+) False ak5
XM_043257420.1 mRNA downstream 47549 875758 ~ 952394 (+) False ak5
XM_043257413.1 mRNA downstream 47551 875760 ~ 952394 (+) True ak5
XM_043257386.1 mRNA downstream 167628 995837 ~ 1006604 (+) False miga1
XM_043257378.1 mRNA downstream 168720 996929 ~ 1006604 (+) True miga1
TU12282 other upstream 349913 447162 ~ 450019 (+) False LOC122360757
TU12283 other upstream 349913 447162 ~ 450019 (+) False LOC122360757
TU12243 other upstream 576889 200092 ~ 223043 (+) True G8167
XR_006252350.1 other downstream 716564 1544773 ~ 1554114 (+) False rc3h1b
XR_006252584.1 other downstream 1350557 2178766 ~ 2189365 (+) True LOC122358138
XR_006252583.1 other downstream 1350557 2178766 ~ 2189365 (+) False LOC122358138
TU13065 other downstream 1442472 2270681 ~ 2275135 (+) False sgip1b
TU13086 other downstream 1570745 2398954 ~ 2401745 (+) True G8725

Expression Profile