RNA id: TU12568


Basic Information

Item Value
RNA id TU12568
length 461
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G8375
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 998369 ~ 999689 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGCCAGGCTAGGCAGGGAGCTGGAAAGCTTGCTGAACAGACTACCATTGGACACCACATTACACGTGTAgcagttctttgagtttaaaaGCAGATTTAGACACTCAGACTCTTTTTTTCAAGGGGGCAGTGCTGAGCAACTCAAATGTTTCGAGCTCTACAGACGAAGTGGCTTTTTTCTTGCCCTTCCTCCTCCTGAAGCGCCGGGCGAGGTAGATGAGGGAGACTGCGCCGAAGGCAGTGGCGGCAAAGAGCTTCTTGGTGCCGGTGCTCAGACTCACCTGCTCAGTGAGGGAATGGAGAGACATAAGGCAATGTTTAACTCTAGATCACCCGCTCAGCTCAAGGCACAGAGATCAGAGTGAGAAATGCAGATAGGGCGAGGGTGAGACAGTCAGACAGGGTGACAGCAGGGATTACATGACTGGAATTGACTGCCTGGCATTTAGTTAGGCGTGCGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12488 lncRNA downstream 221861 774259 ~ 776958 (-) True G8309
TU12474 lncRNA downstream 304449 693580 ~ 694370 (-) True G8296
TU12449 lncRNA downstream 361029 637096 ~ 637790 (-) False G8280
TU12444 lncRNA downstream 362978 634849 ~ 635841 (-) False G8279
TU12454 lncRNA downstream 369328 628598 ~ 629491 (-) True G8280
TU12578 lncRNA upstream 43056 1042745 ~ 1042950 (-) True G8385
TU12579 lncRNA upstream 46901 1046590 ~ 1046907 (-) True G8386
TU12635 lncRNA upstream 248487 1248176 ~ 1248590 (-) True G8415
TU12664 lncRNA upstream 310256 1309945 ~ 1310291 (-) True G8439
TU12668 lncRNA upstream 333156 1332845 ~ 1333104 (-) True G8443
XM_043257289.1 mRNA downstream 3071 974125 ~ 995748 (-) True usp33
XM_043257317.1 mRNA downstream 25476 953716 ~ 973343 (-) False zzz3
XM_043257300.1 mRNA downstream 25476 953716 ~ 973343 (-) False zzz3
XM_043257309.1 mRNA downstream 25919 953716 ~ 972900 (-) True zzz3
XM_043261618.1 mRNA downstream 123592 843215 ~ 875227 (-) True pigk
XM_043257365.1 mRNA upstream 6900 1006589 ~ 1015386 (-) False fubp1
XM_043257340.1 mRNA upstream 6900 1006589 ~ 1015386 (-) False fubp1
XM_043257348.1 mRNA upstream 6900 1006589 ~ 1015386 (-) False fubp1
XM_043257330.1 mRNA upstream 6900 1006589 ~ 1015386 (-) True fubp1
XM_043257356.1 mRNA upstream 6900 1006589 ~ 1015385 (-) False fubp1
TU12372 other downstream 774885 198628 ~ 223934 (-) False G8237
TU12376 other downstream 775674 214738 ~ 223145 (-) False G8237
TU12374 other downstream 847189 142744 ~ 151630 (-) False G8237
XR_006246996.1 other upstream 180256 1179945 ~ 1202987 (-) False dipk2aa
XR_006247871.1 other upstream 384019 1383708 ~ 1383784 (-) True LOC122328985
XR_006247866.1 other upstream 384401 1384090 ~ 1384275 (-) True LOC122328960
XR_006247864.1 other upstream 385008 1384697 ~ 1384875 (-) True LOC122328955
XR_006247870.1 other upstream 385408 1385097 ~ 1385166 (-) True LOC122328981

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00031895 True 485 processed_transcript 0.53 3 NC_007113.7 8680942 ~ 8684933 (-)