RNA id: TU12674


Basic Information

Item Value
RNA id TU12674
length 1636
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G8449
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 1383892 ~ 1385986 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GACACAGTGAAATCTCTGGCATGCATCTTCTCAGTCAGCCAGTCAACCTTTCTTCTTGTGTTCAAGAAGATAACGGCCTGGGTGATTGTAAGAGTCTCGTAGAGGTCACACAGCGTGTCCAACTTCCATTCCTACAGCACAAGTTATACATTAGCACAGAACCACCACAAGGTGTCATCCTACCGCAACATCTAAGATATGTATGGCACAAAATCTCGAGACTTTGGACACCGGACATTAAGAAAGAGGTCCGTCCTAGACTCATTTCCGAATGTGTGCTTTTGCTCTTCCTTCTTTAAAGTTAACCAGTACTAGCATTAACACCAGAGCAAGACCAGAAGGTCTGGAGCTGGTGATTTTAGCACGGCGCTTTTAAAAGAAGGGACATGAGGCATTATAAAGAGGCAACCAGGTCCTCACCTCTCGTTCTACATTGatgtaaaactgtttaataCCCTCCAGAGTCAGCTCCTCCTTTTTCACCAGGATGCGAACAGGTTCTCGCATGAACTTGGTGGTCACCTCCAGCACATCGGCAGGCATGGTGGCCGAAAGCAGCACAACCTGGGTTTGTGCTTAACTTCTGGAAAATCTCATAGATTTGATCCTTGAATCCACGACTCAGCATTTCATCAGCCTCATCAAGGACAAACATCTTGATCCATTTGGgagctgtaataataataataaaaaaaaaaaggcttaattCAAACCTTTACTAAACAGTTACAATACTGTGTTCAAATGTATGATCAGTTAAGTTGTAAACTTCTCCATTACAGGTCAGTCCCGAAAGATGATACCATCACGTCATACTGCATCCCAACTGGGCATGCCTGTTTTATAGTctaatttatttgcattcattGCTTACACAGGTATCTCCTGTTCAGCATGTCAAAGACTCGGCCTGGCGTGCCAACAACGATGTGTGGAGCCTCCGCCTGGAGCTTTTGCATTTCGTTCCGCACGTTGGTGCCTCCAATGCAGGCATGGCAAGAAGCGCCCATGTAATCACCCAAGGCCAGGATAACCTTCTGAATCTAGGGAGCAGACAGTAAGGGgagagaaaaacataaaataaaatgtatttcctcAAGTATTGACATTTAATAGCCACTGTGCACCAAGCCAAATATTGGACCGGTATGACCAGTTAAAAAGGTCATCGCTATAAGACAATCCCaaaaacagtatattaaaacaaagcacCATTTTGCTACAATCACCACATGGAATACAGCTGGCAGTCTAACCAACAGTCAACTAAAATCTAATGTCCAACCACTTACAGTAAACACTTCTGTACTCTAAATTATTCTGGCTGAAGCACTAGCTAACTACttcctgccaaaaaaaaaaattaaacaaattaaaatgacatccACATTTAATGACTGGAGCAGGAAGAACAGCAAAAGAGTACCTTGAATCGGGCTACTGCCAGAATATGCCGCCTTGGTCTGAGACACTAAGTTTATGGTGACCTCAGGTACAGCATACCTGCTGAGCGAGCTCTCGGGTTGGTGCCAGGACCAGAGCCTGAGTCTCTTTCTGCTCAATCTCCAACTGCTGCAGGATGGAAATGGCAAACGTGGCAGTTTTACCAGTGCCTGACTGCGCCTGAGCGATAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12676 lncRNA upstream 1569 1382119 ~ 1382323 (+) True G8451
TU12596 lncRNA upstream 180878 1197427 ~ 1203014 (+) True G8393
TU12606 lncRNA upstream 197860 1180130 ~ 1186032 (+) True G8394
TU12330 lncRNA upstream 601147 680687 ~ 782745 (+) True G8222
TU12329 lncRNA upstream 699699 680687 ~ 684193 (+) False G8222
TU12694 lncRNA downstream 21002 1406988 ~ 1408710 (+) False ccdc39
TU12699 lncRNA downstream 21665 1407651 ~ 1416464 (+) False G8469
TU12698 lncRNA downstream 29340 1415326 ~ 1425295 (+) True G8469
TU12760 lncRNA downstream 213060 1599046 ~ 1673755 (+) True G8508
TU12775 lncRNA downstream 246330 1632316 ~ 1636622 (+) False G8519
XM_043255802.1 mRNA upstream 2422 1375058 ~ 1381470 (+) False b3gnt5b
XM_043255813.1 mRNA upstream 2422 1375060 ~ 1381470 (+) False b3gnt5b
XM_043255810.1 mRNA upstream 2565 1375060 ~ 1381327 (+) True b3gnt5b
XM_043255777.1 mRNA upstream 11976 1356240 ~ 1371916 (+) True tbl1xr1b
XM_043221538.1 mRNA upstream 38879 1340743 ~ 1345013 (+) True kcnmb3
XM_043255821.1 mRNA downstream 4726 1390712 ~ 1396178 (+) False dcun1d1
XM_043255827.1 mRNA downstream 4848 1390834 ~ 1396178 (+) True dcun1d1
XM_043254436.1 mRNA downstream 11538 1397524 ~ 1408721 (+) True ccdc39
XM_043261438.1 mRNA downstream 54952 1440938 ~ 1447899 (+) True LOC122360630
XM_043261429.1 mRNA downstream 54952 1440938 ~ 1447899 (+) False LOC122360630
TU12491 other upstream 555683 799932 ~ 828209 (+) False st6galnac5a
TU12282 other upstream 933873 447162 ~ 450019 (+) False LOC122360757
TU12283 other upstream 933873 447162 ~ 450019 (+) False LOC122360757
TU12236 other upstream 1160849 214409 ~ 223043 (+) False G8167
XR_006252350.1 other downstream 158787 1544773 ~ 1554114 (+) False rc3h1b
XR_006252584.1 other downstream 792780 2178766 ~ 2189365 (+) True LOC122358138
XR_006252583.1 other downstream 792780 2178766 ~ 2189365 (+) False LOC122358138
TU13065 other downstream 884695 2270681 ~ 2275135 (+) False sgip1b
TU13086 other downstream 1012968 2398954 ~ 2401745 (+) True G8725

Expression Profile