RNA id: XM_043254436.1


Basic Information

Item Value
RNA id XM_043254436.1
length 4162
RNA type mRNA
GC content 0.46
exon number 23
gene id ccdc39
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 1397524 ~ 1408721 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGTTCCTAAATGACTGGTCGGCATAACATCGCGGAACCTTTTATGTTTTATCCATAAACGTCTCTGAAACAGCAAAATGTCTAACTCCCTGTTAGCAGAGGTTGGATGGGACGCGGGGTTTGCCATCCCTGTAGCTGACAGAGAAAATAAAGCGTTAGAGGAGGAGCTTCAGAAGAAGCAAAAAGAGCAATTAAATCtcgaaaacaaaataaataaaaacaaggatGTCATAAGCGCTCTAACCGAACACCTCAAAAATCTAAGACAAGAGGTTTCTCACACTCAGGCATTGTGCAAAGCCAGAGAGAAGGAGACCGAATCAGAGGTGCATTTCAGAGCCCTggcggagagagagacaggccgCTTGAAGCAGGAGATCAGTCAGCTGGAGAATCAACTGAAAACGCTGAATGAGAAGAAGAACGCACAAGAGAACAGCGTCTTTAAAGCCACCCAGAAACTTGACGAACTGAAGAATCGGCTGAACTGGGATCAGCAGACCCTGGAGGCCTGGCTGCAGGAGTCAGCTCACAAGGATGAAGACACCATGGCCATCATCAAGTACGCCAAGCAGGACGAAAGCAAGATTCGAGAGCTGACGCTGAACATTGAGAAACTGACTCTTGAAGCCAACCAGAAGAGAAAAACCTTGGACAGCGAAGTGACTGAGAGTGTTACAGCACAGATCGCTCTTGACAAGACAGCCGAGAGCTTTCGTCAGGCTCACATTGAGAGACAAGAGATGATCAGCCAGTGGGAGAACACCATTgaacaaatgagaaaaagagaccAGGAGATACAGCAGTGTGCCATGTTGCAGGCAGAGGTGAATGAAGTGATTAGAGAGAAGAATGATGTGCTCAAGGAGAGGAAGGACTTCATGGAGCGTGAGATAGAGAACAATAAGGAGCTGGAGAGGAATATAAGCACGGCTGAACGTCAGGCGCTTCGACTCAGGCAGCAGCTTCAGGAAGAGGAGAGGAACCAAAGACGTCTGCAGGATGAGGTGGAAGTTCTGAAGGGAACTTTAGACCGAACAGCCACAGATGTGGAGACCACCAGATCTCAGTTAACCAGCATGAAAAAGGACATCCAGGACAAAATAGCAAAAGTTGAAGAGGCAAAGCTGCATAACTCTGCTCTGAAAGAGAAGCTGCGGTTGGTGATGGAGGCAGTGCTGGATGGTGAAGAACAAGCAGAACAGATGGAGCAACTGCGTAAAGAACAGGAACAGAACATCAAAGAGATAGATGCTCAGCTCCTCCGGCAAAGAGAGCTCATGTTCAGAAAGAGTCAGGAGTTGCAGGGAATGCGTGATAAGGAGAAGAACATCACGGCTGAGATCTGTGCCACCCGAGTCGCTATCTCCAACCTAGATAGCAGACTCAGCAAACTGGACCAGAACCTGCTCAAACAGCAGATGATCATCTCCAACCAGGACTTTCAGATCCAGATGCTGGAGAGGAAGACTTCACACTTGCAGGGGAAGGTGAACACAGAAGAGAAGGAAGCTCTGGAGAAGAAGGCCTCTGATCTGGAAGAAGCTCtagaggagaagaagagaacaGCCACCACCCTCACAACACAGCTGAAGAAACTCCAGGATGATATCCGCTGCGTTAGAAAAGACACAGAGAAGGTCGGAACAGAAAAAAGAGAACTGACCTCCAAGATCCATGAGCTGGAACTCTTCATTGACAACTCTGAGAAAGATCAGAAGAAACTCAGGCTCAAAAAACAGGACAGCATGGTGGAGAGAGGTCTCCTGAAGATGGAGGTGCAGCGTCTGAGAGATCTGTTGTACGACCGAGCAGATggagtgctgagcctggagaaGAGACGTCTGCAGCTTCAGACGGccatgaaagagagagaggaggagatcCGTGTACACAGAGAGATGCTTACTAAACAGATCAAGCTCACTGAACAAGAGAGACAAGGGCTCAGTGCTGCTGTGAACGAGAGACTGTTCAAAATTGACAAAATGAGGAAGAGGTACGAGATCCTGACTGTTTCTTTGGCTGCACCAGAGGGAGAAGAGGAGAAATCCCAGGCCTACTTCATTATAAGGGCAGCTCAAGAGAAAGAAGAACTCCAGCGGCAAGGGGATGATTTGGACGCCAAGATCCGCAAGACTGAGAAAGAGATCCACGCGTTGGAGAACACTCTGCAGGTCGTCAACAACTGCAATACAACCTATCGTAAAGCTCTGACCAAAGTCACAGAGTCCAGCCCTGCGCATCAGGAGAAACTGAAGCTGGAGGAGCAGAGGCGAGCAGCTGAGGAGAAATACAAATACAAGAAACGACAAATCCGAGAACTGCAGGAGGACATTGAAAGCATGTCCCACACGTTGGAGGGTCTTCTTCATGAGGAAGCAGTTCAGAATGAGAGCGTTGAGAGGTCTCAAGCCCATGTGCTCTCTCTCAACAAAGACATTCTCTCTCAGGAGGAGAAACTCAACAGAGCCATCAAACAGTGTGCCAAGTATACCAGGGAAATCCGTTCCGCTAAAAACACCGGTGAGAAGACCTTTGAGGAACGTGACATAGAGCTACGAGAACTcagagaattaaataaaagcgtAAATAAGATGCTCCTGGAAACCATGGAGGAGAACCCAGACCTATCATCTGCGCTGCAGATACGTTTTATGCAGGCTGGTCTGTCCCTTCCCTCTCCCGCTTCCACTCCATCCAGCCGTCTGAGCTCAAAGACCAACTCAGCCCGCAGTTCTGCTTCACTCCATCGAGCCTCAAACCCTTCAACCAGCAGCAGTCCCAGAAACCAGTCTGTCACGTCCCCTGCGGTGAAGACGCTGGATCTGGGTTTGGGTCTCTCTGTCACGTCTCCTCAAGGGTCTCGGCCGCCCAGCtctggcagcagcagcaggagcagCAAGTGCAAAAGCCCTTAGAACCAGACGGCGGTTTCTATGAAGAACTGTGAAGTTATTAAGTCTAATTATACCAGTACCACCTTCGTTGATATTCCAGCTGTAACGCAATTCAGTCATTCAAttcagtgtttctttaaaacagcttttatgttttcattttcctAGGAATTCGTTTCTAGGAGAAGTATGACTTTTAGACTTTTTTCATGTTAGACATTTTTCGTGAAAACTCTTGCGGTTGGAAGTACAGACACAgggcttgttttattttactactaCTTTTTAACTTTGATTGTGTTACATGCAGCAACaagaaagaaacaataaaacccTACATTCATGTGTGCTTTGGCCCGTGATCAATCAGAGGTATCAggtgaagggaaaaaaaaatctgaataactTCCGTCTGCTGCCCATTGTGTTTGTGCCGTCAGTTCTTGGGTGTGTTCAGCCTCATTATTCATGAAAACCCATGAGACGGTTCAATCAACGCCCTCAGACAGCCTAGAAACCTGAAGAGCCACTCGATGTTTATTCAGATACGTTCCTCCTAAAGGATAACCAACATGGAGAAAGCTTGCGTCCTGTTTGTtggatttctgtttttttcttttggacaATCGACCTCTACCGTTGCTCCCACAATATCAGAAACAACATCAACTCCAGACATCTGGACAATGACTTCTTCACCATCGACACAGCAGCTCGGCTCTTCAGTTATTACTGGCTTGAGAATAAATGTCAAATCTCTGGTTGATCTGTCTATGAACTCACCTGAGATGGAGCGGCTTGTACGCCAgatTGAAAATTTCATTCCTTCTCAACACAAAGCAACAACGTCTATTACTGTGAGAAGAATCCAGAAAGGCTCCAGCTCTTTTTaggaatattaatattgtaatctagtattcatattttagtaaGGTCAGCTAAACCGTCACGACTATGTTATACTTCTTTGTGTAGTTTAAACAGAGCGCATACATacgatttattttctttgttcatAAAGTACTCTGAATCAGCAGCAGTGTCAAGGCACAACTTTAAGCTTAATTGCTGTTAATTAAATACTATTAAGTCTTTTTTGCCATGATAACtttgctttagttttatttatatagcctaTTCCATGTGTAACAATTGGACTATACCCAATcagaaaacataaatgtttacaaatatataagAAACATGTGTTTTTTCTCCAATAAAGACAGTTATGTGTCCTCAATCAGGCAAAAGTCTTGTCAA

Function

GO:

id name namespace
GO:0007368 determination of left/right symmetry biological_process

KEGG:

id description
K23729 CCDC39; coiled-coil domain-containing protein 39

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12674 lncRNA upstream 11538 1383892 ~ 1385986 (+) True G8449
TU12676 lncRNA upstream 15201 1382119 ~ 1382323 (+) True G8451
TU12596 lncRNA upstream 194510 1197427 ~ 1203014 (+) True G8393
TU12606 lncRNA upstream 211492 1180130 ~ 1186032 (+) True G8394
TU12330 lncRNA upstream 614779 680687 ~ 782745 (+) True G8222
TU12698 lncRNA downstream 6605 1415326 ~ 1425295 (+) True G8469
TU12760 lncRNA downstream 190325 1599046 ~ 1673755 (+) True G8508
TU12775 lncRNA downstream 223595 1632316 ~ 1636622 (+) False G8519
TU12776 lncRNA downstream 223595 1632316 ~ 1636622 (+) True G8519
TU12857 lncRNA downstream 272706 1681427 ~ 1683093 (+) True G8556
XM_043255821.1 mRNA upstream 1346 1390712 ~ 1396178 (+) False dcun1d1
XM_043255827.1 mRNA upstream 1346 1390834 ~ 1396178 (+) True dcun1d1
XM_043255802.1 mRNA upstream 16054 1375058 ~ 1381470 (+) False b3gnt5b
XM_043255813.1 mRNA upstream 16054 1375060 ~ 1381470 (+) False b3gnt5b
XM_043255810.1 mRNA upstream 16197 1375060 ~ 1381327 (+) True b3gnt5b
XM_043261438.1 mRNA downstream 32217 1440938 ~ 1447899 (+) True LOC122360630
XM_043261429.1 mRNA downstream 32217 1440938 ~ 1447899 (+) False LOC122360630
XM_043261421.1 mRNA downstream 32469 1441190 ~ 1447899 (+) False LOC122360630
XM_043253906.1 mRNA downstream 60339 1469060 ~ 1472849 (+) True asip2b
XM_043219688.1 mRNA downstream 108976 1517697 ~ 1525574 (+) True zgc:153115
TU12491 other upstream 569315 799932 ~ 828209 (+) False st6galnac5a
TU12282 other upstream 947505 447162 ~ 450019 (+) False LOC122360757
TU12283 other upstream 947505 447162 ~ 450019 (+) False LOC122360757
TU12236 other upstream 1174481 214409 ~ 223043 (+) False G8167
XR_006252350.1 other downstream 136052 1544773 ~ 1554114 (+) False rc3h1b
XR_006252584.1 other downstream 770045 2178766 ~ 2189365 (+) True LOC122358138
XR_006252583.1 other downstream 770045 2178766 ~ 2189365 (+) False LOC122358138
TU13065 other downstream 861960 2270681 ~ 2275135 (+) False sgip1b
TU13086 other downstream 990233 2398954 ~ 2401745 (+) True G8725

Expression Profile