RNA id: TU12699


Basic Information

Item Value
RNA id TU12699
length 1143
lncRNA type sense_over
GC content 0.37
exon number 2
gene id G8469
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 1407651 ~ 1425295 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttttttttttttttttttttttttttttttttTcctattatttcattttatttcattccttGTATGAAACCaaaaaccaacaaccacaaaaacaacaaaacaagaagagcaagtaaatacataaaagttGGACATACATTGACAGAGGTGTGAGACGGATGGAAATGAGATGCAGTGATTCTTGTTGGATTGTCTCGTGTTGTGCGTCACAGGCTAAACGCATCTCTCACAATCAACACCAGGACATCTGACACTGGAGCTCCCAGACGCCCATAGTTTTCTCTATTTTTAGCTTCAGCCATCTGGAAAATTCCCCAAGTCATGACCCATCAACCTCAACGTATTCCAGATCGACCCAGCGttatctattaatatatttaatgtgttcaAATAACATCTGTAAAGGCAGAAAAGCAAATCAAAGCTCATAACTTTCTAAGAACTCCAGACATATTCAGTGATGCCTAAGTCATACTTCCTATTTTCTTTCGCCAAATGAACAAAGGACATCAAATACACTAAGTGTAGTTATCATACACAAAGAAAGTGCACTAATATCAAAATGACGCAGTTGCTTTTCAATTTTCAGTATTGAAAATTCTTCAGTTTTTACTGCATCTGACAAGCAGTACAAAAAAAGAACGTCCCATGAGTCTTTACCATAGTCCCAAAATCTCTGTGCATTCAGCTTCTTGGACCTGTTTTTCTTTCCAAGCATAACACTAAACATGAGTTCAACGTGTTATCTAGTATTAGTATCTTTAAGCAGAATCCTCTTCATGTCGATGATCAACAAGGAAACCGTCATTCAGCCCTTgacagaataaatgaaataaaaacatggcGAAAAGGGATGAAACACACCAGTATGATAAACAGCACACAGTACCTAGCTTTTCAGTTAGACTGAGCTATTTTGGATATCTTGGATATCTTCGCAATTGCATGTACTAGAAGTTTATAAATCCATGAGGTATGTGTTTTTGACAaacagtgtcttttttttttctcagggaTGGAATCCATGCTCCAGGCACGTCCTCTTGAAAGAGTTATTGGGTCTTCGGTTCTGCCAACTTCTCTGGGTCCTCATCCAAGTCAGttaagcagcagcagcacatgaTCTGAGTGTATTTGGTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12674 lncRNA upstream 21665 1383892 ~ 1385986 (+) True G8449
TU12676 lncRNA upstream 25328 1382119 ~ 1382323 (+) True G8451
TU12596 lncRNA upstream 204637 1197427 ~ 1203014 (+) True G8393
TU12606 lncRNA upstream 221619 1180130 ~ 1186032 (+) True G8394
TU12330 lncRNA upstream 624906 680687 ~ 782745 (+) True G8222
TU12760 lncRNA downstream 182582 1599046 ~ 1673755 (+) True G8508
TU12775 lncRNA downstream 215852 1632316 ~ 1636622 (+) False G8519
TU12776 lncRNA downstream 215852 1632316 ~ 1636622 (+) True G8519
TU12857 lncRNA downstream 264963 1681427 ~ 1683093 (+) True G8556
TU12881 lncRNA downstream 488902 1905366 ~ 1910679 (+) True LOC122360854
XM_043255821.1 mRNA upstream 11473 1390712 ~ 1396178 (+) False dcun1d1
XM_043255827.1 mRNA upstream 11473 1390834 ~ 1396178 (+) True dcun1d1
XM_043255802.1 mRNA upstream 26181 1375058 ~ 1381470 (+) False b3gnt5b
XM_043261438.1 mRNA downstream 24474 1440938 ~ 1447899 (+) True LOC122360630
XM_043261429.1 mRNA downstream 24474 1440938 ~ 1447899 (+) False LOC122360630
XM_043261421.1 mRNA downstream 24726 1441190 ~ 1447899 (+) False LOC122360630
XM_043253906.1 mRNA downstream 52596 1469060 ~ 1472849 (+) True asip2b
XM_043219688.1 mRNA downstream 101233 1517697 ~ 1525574 (+) True zgc:153115
TU12491 other upstream 579442 799932 ~ 828209 (+) False st6galnac5a
TU12282 other upstream 957632 447162 ~ 450019 (+) False LOC122360757
TU12283 other upstream 957632 447162 ~ 450019 (+) False LOC122360757
TU12236 other upstream 1184608 214409 ~ 223043 (+) False G8167
XR_006252350.1 other downstream 128309 1544773 ~ 1554114 (+) False rc3h1b
XR_006252584.1 other downstream 762302 2178766 ~ 2189365 (+) True LOC122358138
XR_006252583.1 other downstream 762302 2178766 ~ 2189365 (+) False LOC122358138
TU13065 other downstream 854217 2270681 ~ 2275135 (+) False sgip1b
TU13086 other downstream 982490 2398954 ~ 2401745 (+) True G8725

Expression Profile