RNA id: TU12857


Basic Information

Item Value
RNA id TU12857
length 1667
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G8556
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 1681427 ~ 1683093 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tacaactctgacaccttttattccttttcacacaaattaacagagttttgattaataatatttgaagaACAATCTTCAAAACAAtcttaatatgctgggagatttgaataTTGATGTTTCTGAGCactagcatcacacatatccagctttagGTTTTCATAGACTGTaagtttgttcggtagctcacggagtacggagatgtgtaactacggttcgaAAAGACAGtttaaatctgtgtaaaaggaagctGAGATGACACGGTTGCATTAATAAATGggttttttatatcagttttgcatttgttaacccTTTCGGGTAGgggtagggcatatttccaacatgatagagcattaacttttagaaaCAGTCTccggatatttcaattctgaatatcaatgtaataaaaatgtgtcacggttcatgtattgaacctgtgttttagctccACTTAatagacatttctctttgaaactgctgagaaatgtgcagtaaggcacgtaaaaatggcgttgcacaaaaagtgcgcGGAGGTACACAGAGGTCGGAATAACCACTACTAATAATcaatactaataaatggctattctagtaatatgcatgctaataggcAACTCGTTAAGAggcaaaaataaagtgttaccacaatcaaatattacaatgcattttaacataGCTTACAATTACATATGAAAAGATATAACTCATTGTAGCATGCATTTTGTATacctttactgtataaaaaaaccATTGGTGTTACAAATAAAGCTTTCTTCAGTCAGGCTGGTTATTTACCTTATGTTGTTTAAGGGCCAATTAACACAAAATTGTTGCCATGTAAATGTCGTTTCTGATAACACAAGCCATCCGCATTAATGTAACACTAAAAAGCTTCTACCATATTATAGATGTGTGGCCAAATAGATTGGATGCACAACCTTTGACTTCGACAAGGTGATATTTTGCATTCtgttatttgtattcagtgtTCTTTCCCTGTTTTCTGTGACCCTATCAGATCAAGCTTGCGGCCCACCTCCTCACTTTCATGTTTTCTTCCAGCATTTTAGCATGCCATCACTTTGCTCGTACCCTCAGTGAACCGTGCTGAAACACTGGAAATCTGGACACCCTATGTGGCAACACCTCGTGAGCCACGCTTGTCTGCGAGATAGAAACATGAAGAAATTTAGTTCACAATGCTGCTGTCAATCACGACGCACCGCTCTGGAGCAGCAGATGGTTTCGCAGATCcaaaaacaaattcatctgAACCCCAGCAACCGAGGTAAATAGCTCACACGCTTGGAACAGACTCCTGCCGCCGTGGAGAAGAATCTCAGATAATGGGCTCTGTCCAGGGTGCCAGCCTTTCGAGCGCCACACGTCTCCATCTCCTCGGTGTTCATCCATCACACCGGGAGCGATGACAGAGCGGAGGACTGAGGGAGGTCACTCTCCTCATCGTTATTCGCCTGCCGATAAGTGCCAGCGCTCGTCTCTCGAGGACCGTGCATTTAGGCCACTAAATCTGCCACAAAGAAAGTAGGAGGAGAGCATATGCCGTCCGTCTGTAGGGGTTGTTAAGAGCCTCTTCGCACGTTGAGGTGTGAGTGATGGAACGCTGAAGAATGAGCCGGAGATGTATGACATGTGAAGCAGGCaggaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12760 lncRNA upstream 7672 1599046 ~ 1673755 (+) True G8508
TU12775 lncRNA upstream 44805 1632316 ~ 1636622 (+) False G8519
TU12776 lncRNA upstream 44805 1632316 ~ 1636622 (+) True G8519
TU12698 lncRNA upstream 256132 1415326 ~ 1425295 (+) True G8469
TU12699 lncRNA upstream 264963 1407651 ~ 1416464 (+) False G8469
TU12881 lncRNA downstream 222273 1905366 ~ 1910679 (+) True LOC122360854
TU12890 lncRNA downstream 235613 1918706 ~ 1919313 (+) True G8585
TU12891 lncRNA downstream 236319 1919412 ~ 1922223 (+) True G8586
XR_006253155.1 lncRNA downstream 242767 1925860 ~ 1929567 (+) True LOC122362698
TU12886 lncRNA downstream 252821 1935914 ~ 1936759 (+) False arl14
XM_043262111.1 mRNA upstream 83164 1591993 ~ 1598263 (+) True LOC122361145
XM_043255388.1 mRNA upstream 112885 1563005 ~ 1568542 (+) True extl2
XM_043255332.1 mRNA upstream 121653 1544773 ~ 1559774 (+) False rc3h1b
XM_043224318.1 mRNA downstream 164993 1848086 ~ 1855235 (+) False rgs18
XM_043224326.1 mRNA downstream 165951 1849044 ~ 1855235 (+) True rgs18
XM_043218894.1 mRNA downstream 181412 1864505 ~ 1867191 (+) True rgs1
XM_043218902.1 mRNA downstream 181414 1864507 ~ 1867191 (+) False rgs1
XM_043221825.1 mRNA downstream 190929 1874022 ~ 1876886 (+) True rgs13
XR_006252350.1 other upstream 127313 1544773 ~ 1554114 (+) False rc3h1b
TU12491 other upstream 853218 799932 ~ 828209 (+) False st6galnac5a
TU12282 other upstream 1231408 447162 ~ 450019 (+) False LOC122360757
TU12283 other upstream 1231408 447162 ~ 450019 (+) False LOC122360757
TU12245 other upstream 1458384 222045 ~ 223043 (+) False G8167
XR_006252584.1 other downstream 495673 2178766 ~ 2189365 (+) True LOC122358138
XR_006252583.1 other downstream 495673 2178766 ~ 2189365 (+) False LOC122358138
TU13065 other downstream 587588 2270681 ~ 2275135 (+) False sgip1b
TU13086 other downstream 715861 2398954 ~ 2401745 (+) True G8725
XR_006252635.1 other downstream 728072 2411165 ~ 2419955 (+) False LOC122358652

Expression Profile