RNA id: TU13006


Basic Information

Item Value
RNA id TU13006
length 984
lncRNA type inter_gene
GC content 0.54
exon number 2
gene id G8670
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 2053311 ~ 2055730 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAGACTGAGCAGCGTAGTCCCACACACCACCAGAGCCAGACCAGTGAAGAGCAACAGCACGGGATCCACCGTTCCTCCGCTGCGCAGCTGCTCAATGCGTCTGCGGCTGCGTATGCAGCCCATGTCTTGCACTGCAGAGCTGAGCAGCTGTTTCATGAGGACCACCAGAGCCAGGAGACAGAGAGTGGAGCCTACACCCAAGCGCCACAGCACCGAGGGCCCGGCGGCGGAGGAGGCGGTCGAGAGGAGCCCCACGCCGGCCGAGCCCAGGCTCAGAACCATGACCACTGAAAAGCAGTAGCACAGGAGAGACACGTGCGGCTCGTTGAACCACCACAGCTCCACCTGCTCCTCCACGGCTTGGCGCTGAAGCCACAAAGGGTCCGCTTGCAGACGAAGGCGAGCTCCGTGACTCACCACGCTCAGGGGGAGAAGCTCCATGTCCAGGGTCTCTCAGATGCTGGTGTGTGTATAGTCTCCTATCTTTCGTCAGTGCATGTTTTTGATCCTTGATTCAGACTCCACAAACATCATCATGTATCCTGAACAGCACTCCTGTGGAAAAGACGGTCCAGATTTAGAAAGCTAAATTCtagtttaattttaacaatCACCATCCTGGAACTCCTCTGTTTTGGCAGCAGTGCAGGACCGTTGACTGTCacgtctctctttctttctgtctttttgtttacCTGCCTCTCTCATGCCGTGGTGTGTCACGGTGCGAGCCGACTGGACACTGGTGCCAAGCACCGAGGACGATGACATACTCTCCCGTTGTCTTCTCCCGCCACATTCCACCAGGACAATAAAAGGTTTCTCATTGTCTTCTTTGTGACACTAAACAGCATGTCCGCAAACGGAGAAGGCACACAAACGTTCGCTCTCACACATGTGTGAGCCTAGCAGGCAGCATGACTGACACAGAAAAGCAAGGATGTCTTTCAAGGCATTGTGGGAAAAACAATAGGCCAACTGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252239.1 lncRNA upstream 104949 1947128 ~ 1948362 (+) True LOC122355709
TU12886 lncRNA upstream 116552 1935914 ~ 1936759 (+) False arl14
XR_006253155.1 lncRNA upstream 123744 1925860 ~ 1929567 (+) True LOC122362698
TU12891 lncRNA upstream 131088 1919412 ~ 1922223 (+) True G8586
TU12890 lncRNA upstream 133998 1918706 ~ 1919313 (+) True G8585
TU13034 lncRNA downstream 114866 2170596 ~ 2170820 (+) True G8691
TU13035 lncRNA downstream 131627 2187357 ~ 2191448 (+) False LOC122358138
TU13045 lncRNA downstream 156023 2211753 ~ 2212073 (+) True G8700
TU13046 lncRNA downstream 156528 2212258 ~ 2212609 (+) True G8701
TU13053 lncRNA downstream 165978 2221708 ~ 2222074 (+) True G8706
XM_043257124.1 mRNA upstream 1185 2038907 ~ 2052126 (+) True LOC122357653
XM_043257132.1 mRNA upstream 1185 2038921 ~ 2052126 (+) False LOC122357653
XM_043257119.1 mRNA upstream 1185 2043768 ~ 2052126 (+) False LOC122357653
XM_043257091.1 mRNA upstream 36280 2005196 ~ 2017031 (+) True scp2a
XM_043257142.1 mRNA upstream 48898 2002091 ~ 2004413 (+) False czib
XM_043253397.1 mRNA downstream 17040 2072770 ~ 2076037 (+) True ebna1bp2
XM_043221458.1 mRNA downstream 27945 2083675 ~ 2156239 (+) True LOC122326519
XM_043221475.1 mRNA downstream 27945 2083675 ~ 2156239 (+) False LOC122326519
XM_043221484.1 mRNA downstream 27945 2083675 ~ 2156239 (+) False LOC122326519
XM_043221465.1 mRNA downstream 27945 2083675 ~ 2156239 (+) False LOC122326519
XR_006252350.1 other upstream 499197 1544773 ~ 1554114 (+) False rc3h1b
TU12491 other upstream 1225102 799932 ~ 828209 (+) False st6galnac5a
TU12282 other upstream 1603292 447162 ~ 450019 (+) False LOC122360757
TU12283 other upstream 1603292 447162 ~ 450019 (+) False LOC122360757
TU12245 other upstream 1830268 222045 ~ 223043 (+) False G8167
XR_006252584.1 other downstream 123036 2178766 ~ 2189365 (+) True LOC122358138
XR_006252583.1 other downstream 123036 2178766 ~ 2189365 (+) False LOC122358138
TU13065 other downstream 214951 2270681 ~ 2275135 (+) False sgip1b
TU13086 other downstream 343224 2398954 ~ 2401745 (+) True G8725
XR_006252635.1 other downstream 355435 2411165 ~ 2419955 (+) False LOC122358652

Expression Profile