RNA id: XM_043257962.1


Basic Information

Item Value
RNA id XM_043257962.1
length 2886
RNA type mRNA
GC content 0.57
exon number 25
gene id sgip1b
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 2270679 ~ 2288216 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCCACACTCTCGTTCTCCGTTCATCAGCGGCTGTCCTCAGCATCCCCTCTGTGATGATGGCGTGCGTGGATGCTGCTGATGCGGCGGTGCCCGGGGCCTAACCCACCGGTTACCGGGAAACCCGAGAGACGAGGGCGCGAGGGGCCGGGCAGTATGAGCCTTTCCTTTAACGACCGGTTACCGGATCACTGCTGTATCTCGTGTCAGTTTGTTTGCTCGCGTGAAACCGAGGAATGAAGTGCTGCAACCATGATGCAAGGACTGAAAAAGCGTACCCGAAAGGCCTTCGGGATACGGAAGAAAGAAAAGGACAGTGACTCCACTGGATCCCCAGACAAAGAAAAATCTAAAAAAGCCAATGGTGCACCGAATGGTTTCTACGGTGAGATCGACTGGGATCGTTATAACTCTCCTGATGTTGACGATGAGGGTTACAGCGTTAAACCCGGAGAACAAGGAGGAACAGCTCCAAAAGTCAAGACGTTCTTCTCCTCCAGTGAGTCggagggagaggaggagcaCGGAAAGAAATTTAAGATCAAGATCAAACCTTTGACAGCAAACAGTGGAAACTGTACAGTGTCTACTATGGATGAGCTGAAGGCCTCAGTGGGGACGCTGGCCATCTCTCCTTCTCCTCTGAGAAAGAGTCCGAGGCGAAGTCCGTGCCCGATGAAGCGAAACCTGTCAAATGAGGAGATCGCCAGACCACGACGATCTACTCCAACACCCACGACAACTCCAGGACCTGGTTCGGACCCGCCCAGagaaaacacaacagCGTTCTTCGGCCCACCGTTTGAGACCAATTTCGAAGCACACAACTCAGAAGTGTTCCCGGTTGAGCCGGAGCTCTGGTGTCAGTCCACTTCTCTCTCCACCTGTGTTCTCAGCAGATCTCTGCCCACTGGAGCTCCGCCTCCACTTCCTCCAAAGAACATTCCTGTGACCCCACCTGGACGCAGTTCTAGCTCTGTAGAGTCCTCCGgTTATTATAGTGTGGTTCCTAGCATCAGAGGAGAGGGATCAGCTTCGGCCTGTCAGGACGCCCCATTATCTGACCCATCCGGAGGGGCGTCTATGCCTGACTTGGACAGTGTTTTTGGGCCTGTGGAGACGCCCAGGTCTGCATCAGATGTGGTGCAGTGCAGCTGGGTGAGCTTCAGCGAAGGCTCTCCCGCCAGACCCCCTCCCCCAGACGAACCCGCCCCTTCTCCGCCTCTGTCTTCTTCCCCCACGGACTCGCCCCCAACCTCGCCCCTCAACCTGCCGCCTCCCGCCTCCCCTCCCCCCCACTCCATCCCGCCTCCAGATTcacctccaccacctccacccTCGGACTCTCCTCTGAGTCCTCCAGACCTCCCCTGCTGCTTTCAGCTCCCGGAGTCCGAGCTCACCCAAGAGTCCCCAATGACCCCCGCCAGCCCCGGACTGCCCTTCCCGCCAGCAGACCACCATCCTCATGGAGCCATACCTTCCCCTCTTACCTTGAGAGACGACAGCAGGAGAACCCCTGACCTGGTGGGCATGAGGGATGAGATTTCTGTGTTTGGCACATCACCCAAAGACCTCGCAGCAGGAAGCTTCAGAGGAACCCCACCTCCTCTGCCACCTCCTACTTACAGGAGTGTGGTGGGCTCCCCGGGGCCCGGCAGTGGGCCGTCGTCTCCCGCACGTGCCGGCACTCCGCTGTCCGCTGGGAGTCCGATCCCACCTCTACCACCAAGACCATCGTCACGACCTAAACTACCACCTGGAAAACCAAACCTAGCAGATCTGGCCCGACCCTTCAGCCCCCCCATCCACTCGTGGAGTCCTCCACCCTTTGCTCCTCTGGCCAGAGCCGAAAGCAcctcctccatctcctccgtCACCTCTCTGAGCGCAGCCTCCACACCTACACTAGGCCGAGAGCTCAACCTCTCTGTGTCAGTATGCTCCAGAGGTCCGAGTCCTCTCACAATGGGTCCCCAGGACACTCTACCGGTGGCAGCCGCCTTCACAGAGACCATCAGCGCTTACTTTAAAGGAGCAGATCCCACTAAGTGTTTGGTGAAGATCGCCGGTGAGATGGTGTTGTCTTTCCCAGCAGGGATCACCAGACACTTCTCCACCCATCCCAGTCCACCGGTGCTGACCTTCACCATCAGTCAGTACAGTCGACTGGAGCAGGTCCTTCCCAACCCACAGCTTCTGTGCTGCGACACCACGCCACCTACAGGTGATTCAAAGGAGTTCTGGGTCAACATGTCAAACCTGTTGAGTCACCTGAAGAAGGTGGCTGAGCAGAGGCCACAGGCCACGTACTACAACGTAGACATGCTGAAGTACCAGGTGTCCACTCGAGGCATCCAGTCCACTCCGCTGAACCTGGCGGTGAGCTGGCGGGGTGATGCCTGCAGCACAGACCTCAGGATAGACTATAAATACAACACGGAGGCCATGCCCATACCCACACCGCTCACCAACATCCACTTCATGGCAGCTGTGGACGGCGGCGTGAACAAACTGCAGGCTATGCTCCCACTTGCCCACTGGAACCCGGAGGAGCAGAACATAATGTGGAAGATCCCAGAGCTCTCACAGAGGTCTGAAAATGGAGGTAGTGGCGCTCTTCTGGCTCGCTTCCGGTTAGGAGGTCCCAGCAGACCTTCTCAGCTGGCAGTGCAGTTCACCAGTGAGGGCAGCACTCTGTCTGGATGCGATTTTCAACTCGTCGGTTCAGGCTACAGACTCTCTTTGgtcaaaaaaaggttttctgcAGGTAAATATCTGGCAGACAACTGACATGTAGGATGGACTGCGAGTGGGGGTGCTCTTTTGGCACTACAAAGActttggaaaaatgtttttattgaaatacagCACTCAAAATCTCACGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13050 lncRNA upstream 17088 2249222 ~ 2253591 (+) True G8703
TU13054 lncRNA upstream 43428 2226905 ~ 2227251 (+) True G8707
TU13053 lncRNA upstream 48605 2221708 ~ 2222074 (+) True G8706
TU13046 lncRNA upstream 58070 2212258 ~ 2212609 (+) True G8701
TU13045 lncRNA upstream 58606 2211753 ~ 2212073 (+) True G8700
TU13075 lncRNA downstream 114 2288286 ~ 2321187 (+) True G8716
TU13076 lncRNA downstream 653 2288825 ~ 2290040 (+) True G8717
TU13102 lncRNA downstream 155416 2443588 ~ 2445200 (+) True G8737
TU13085 lncRNA downstream 223450 2511622 ~ 2609519 (+) True G8724
TU13145 lncRNA downstream 324350 2612522 ~ 2613104 (+) True G8764
XM_043257912.1 mRNA upstream 5154 2213103 ~ 2265525 (+) True pde4bb
XM_043257920.1 mRNA upstream 5154 2231999 ~ 2265525 (+) False pde4bb
XM_043257951.1 mRNA upstream 61456 2205194 ~ 2209223 (+) True LOC122358163
XM_043257930.1 mRNA upstream 83014 2178766 ~ 2187665 (+) False LOC122358138
XM_043257941.1 mRNA upstream 92514 2173372 ~ 2178165 (+) True LOC122358154
XM_043220819.1 mRNA downstream 3291 2291463 ~ 2293495 (+) True LOC122326129
XM_043224306.1 mRNA downstream 21365 2309537 ~ 2316103 (+) True bcl6ab
XM_043258538.1 mRNA downstream 34539 2322711 ~ 2327443 (+) True LOC122358683
XM_043258628.1 mRNA downstream 102706 2390878 ~ 2391452 (+) True LOC122358767
XM_043258526.1 mRNA downstream 118570 2406742 ~ 2419955 (+) False LOC122358652
XR_006252584.1 other upstream 81314 2178766 ~ 2189365 (+) True LOC122358138
XR_006252583.1 other upstream 81314 2178766 ~ 2189365 (+) False LOC122358138
XR_006252350.1 other upstream 716565 1544773 ~ 1554114 (+) False rc3h1b
TU12491 other upstream 1442470 799932 ~ 828209 (+) False st6galnac5a
TU12283 other upstream 1820660 447162 ~ 450019 (+) False LOC122360757
TU13086 other downstream 110782 2398954 ~ 2401745 (+) True G8725
XR_006252635.1 other downstream 122993 2411165 ~ 2419955 (+) False LOC122358652
TU13121 other downstream 259941 2548113 ~ 2555321 (+) False zgc:55943
TU13123 other downstream 261720 2549892 ~ 2555321 (+) False zgc:55943
TU13124 other downstream 261720 2549892 ~ 2555321 (+) True zgc:55943

Expression Profile