RNA id: TU13102


Basic Information

Item Value
RNA id TU13102
length 914
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G8737
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 2443588 ~ 2445200 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATCGGTCAGGATGTTTCTGCTGCGGAGGCGGTTGAAGTTGAACAGCACATCACCGCATGGCGAGTGAACTTAATGCAGCCGCCTGCTGCACTTGACATTGTTCACCTTGCATTTCGACGAACATCACTACACAGGGAACAGCAGTTTACGTGATTTAAGACGCTTCCCGCGCGTGACACTTGTTGAGCAGCGATAGCCTTGTGGCATACTGGCCAAGTATTAATGTGATGGAAATTAATAACGTTATGACGTATTATGAATAAACGACTCCATCACGTCACAGGTGTTTGGTGTAAAACGAGCGTTTCGGTAATGTTTCAGTGAAACAGAGACTACAGGACACTGAATAATCTCACGCTGATATGATTGAATGCTGACGCGGTCGAACATAAAACCTTCGCAcgctgtatttatgtatttattaaccGCAAGTCATGACAACTAGGTGAGTTCACCAGCATGGTCACACGCGCATGGGTGAATGCTGAAATTGAATATAAATCAAGCATTTTCgacttttaaaactttaaaggtaCACCATCTTTACGCGTCTACTGTTTTGTTCCCGACACGGACCGTCCGTTATAGGGAATAAACTTAGTTTCCCCTTCCATATAAAGTTGCATAAACCTGTCTTTATCATACGGTTCAGTGCTTCCTAAATCGGCTTAAGCTCGCTGAATGTAGCGCAACTTCTACAGACGGCGAACCTGACAAACGAGTAATAAAGTGAGTAATTCGCGCTATTAGGCCACCAGAAGTCGGGTTGCGTAATTAACGCGACAGCTCTAAATGCGAGAAAGTAGACCGgcgtaaaacaaaacaataaaaacaaacagctatAGAAGCGACTCGTCTCTTTAGGGCTTCTCGTGTTGACTTTTTTTGCTAGATAGAAGAAAATCACCTGGTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13075 lncRNA upstream 122401 2288286 ~ 2321187 (+) True G8716
TU13076 lncRNA upstream 153548 2288825 ~ 2290040 (+) True G8717
TU13062 lncRNA upstream 155372 2287346 ~ 2288216 (+) False sgip1b
TU13050 lncRNA upstream 189997 2249222 ~ 2253591 (+) True G8703
TU13054 lncRNA upstream 216337 2226905 ~ 2227251 (+) True G8707
TU13085 lncRNA downstream 66422 2511622 ~ 2609519 (+) True G8724
TU13145 lncRNA downstream 167322 2612522 ~ 2613104 (+) True G8764
XR_006252229.1 lncRNA downstream 172007 2617207 ~ 2618878 (+) False LOC122355548
TU13126 lncRNA downstream 172068 2617268 ~ 2669597 (+) True LOC122355548
TU13127 lncRNA downstream 172068 2617268 ~ 2619357 (+) False LOC122355548
XM_043258550.1 mRNA upstream 12131 2427557 ~ 2431457 (+) True LOC122358704
XM_043258526.1 mRNA upstream 23633 2406742 ~ 2419955 (+) False LOC122358652
XM_043258523.1 mRNA upstream 23633 2411169 ~ 2419955 (+) True LOC122358652
XM_043258628.1 mRNA upstream 52136 2390878 ~ 2391452 (+) True LOC122358767
XM_043258538.1 mRNA upstream 116145 2322711 ~ 2327443 (+) True LOC122358683
XM_043261741.1 mRNA downstream 8650 2453850 ~ 2461222 (+) True LOC122360901
XM_043261780.1 mRNA downstream 50743 2495943 ~ 2510010 (+) True LOC122360938
XM_043254791.1 mRNA downstream 96715 2541915 ~ 2544563 (+) True imp3
XM_043254814.1 mRNA downstream 102866 2548066 ~ 2554174 (+) False zgc:55943
XM_043254822.1 mRNA downstream 105086 2550286 ~ 2554174 (+) False zgc:55943
XR_006252635.1 other upstream 23633 2411165 ~ 2419955 (+) False LOC122358652
TU13086 other upstream 41843 2398954 ~ 2401745 (+) True G8725
TU13065 other upstream 168453 2270681 ~ 2275135 (+) False sgip1b
XR_006252584.1 other upstream 254223 2178766 ~ 2189365 (+) True LOC122358138
XR_006252583.1 other upstream 254223 2178766 ~ 2189365 (+) False LOC122358138
TU13121 other downstream 102913 2548113 ~ 2555321 (+) False zgc:55943
TU13123 other downstream 104692 2549892 ~ 2555321 (+) False zgc:55943
TU13124 other downstream 104692 2549892 ~ 2555321 (+) True zgc:55943
TU13140 other downstream 146434 2591634 ~ 2592758 (+) True G8760
TU13128 other downstream 172068 2617268 ~ 2669943 (+) False LOC122355548

Expression Profile