RNA id: TU13121


Basic Information

Item Value
RNA id TU13121
length 2795
RNA type TUCP
GC content 0.43
exon number 7
gene id zgc:55943
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 2548066 ~ 2555321 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATTATTCACGTCTGTGGGCTGATCTGCGTTGAGCTGATCCCGCTTGAACGCTTTTCCTGATCACGAACAGCACGATTAAACTCTGCATCCGCACTGAAGGTGCTGTAGAGAGTGCCATGCAggaaggagaggagaggaagtgAGGCGATGGGCTGCACCTCAGCCAAGCAGTTGTCATCTGTACCCAGTGATGAAGAGGGCCGGGGTAAGGCCTACAGCAATGGAGACGCCTTCTCCGATGAGTACAAACTGAAAGGAGTCGAGAAGGTGAAGTACATGCATGGAGAAGAGGAGCGCACGAACACACGAAACCAAGAGAACTTGGAAAAGAGCACATTTTTGCACAAGGGCAGGCATAAAGATGCCACCGGGAATAGTAATAAGAtaagTATCCACTCTTCAGAGAGCCAGCAGGAgttcttcaggatgctggatgAGAAGATTGAAAAGGGACGGGACTACTGCTCGGAGGATGAGGATATGACATAGCATGCAGAGACATTTGACTCGCGCCAACATTGAGTCAATCCAGTCCCAAAGTTCTTTACACTTGCTTTCCATGCCTCCGTACCCAGCAAGTATTAATCTTCAAGAGTGTGGCTTCAAGTGACATCCAGCCCAGCTGTCCACTCCGTTTACAATTTACACACTCTCCCAAATGTCTTACAGGTCACTATTCGAGACTCTTGAGGACTAGTAATTAAACGGTATGGGGGCATGGAAAGGCCGTGGTTAAGGAGACTGGGATTCGGCCCAAGATTTGAATGGGAAAGCCATTATCAGACTGTTCCTCAATCCCTTGCCTTACACTACCCATAAGCCTTCTCCTACTCATAGACTACATACAGTGGAGAGAGCCATGCTACGAAACCTGGATTTCGCCCTCCCTTGGATATGGACACTACAGTCCGTACTAGCAGTGGAGATGATATCTCCCAAGGAGGACATTCCTACCGAGAGACGACGCAGTAGGTGAAAGCGCATGGACAGAAACACTAGGCCATTTCTAGCATtccaattgtttttttttaaacaaagtattTTTCACCCACgatgtattatgtatatgtcTTTTTGACCTTTTTCTTTGAGTTACGTTACAACGCTCAGGACAGCAGTGCTGTATGTATCATCACTAGATTTGTTTGTTAGGTGAAGGCTGTGCAGTTCCTTCAGGGCCGGTCTTGAGAACGCGTCGGAGGGAGGGAAACAGATCACAGCATCTAGCCGTGTTTAGAGACGCCACTTACAGCATCTTAAGGTCACGTAGTACTCATCTTACTCTATATAACAGGTGGATATCATACGTTCGCTTGACATTTATAGTCACTATTCTTGAGTCGAAATCCAGTACAAGTTTCAAAACCAGCCTTGAGAGAGTTTTACATGGATACGTTTTTATTACCGGGAAGTGCTTCTTCCTTTTACAGTATGACAGTAATTTGCCATAGCCTTAAGCACACAGTGTTTTCCTTTCTGAAATGATATACAACAGTAAGCcattaatttctgtattttcacacTAAAGTGAACAGTATCCCACATGTATGCTTAAGTTCTCGATGTACACAGTTGGGCCAAACAAAATTGCCAAAAATGCAAGTGTGATGCTGagtgaaagaataaataaatacacaatgaCCAACTATCCAAGGAGAAGCATCAgttgtttgggttttttgtaTAACgaagtcaatggggtccagtgtattttatttatttttacagaaaattaagGATTGGAACACGGTATGAATAAGTGAGAGGTTTTGGCAGAATTATTACTTGGTTCGCCCCAAAAATGAAGATGCTCTCATTTATTcgccctcatgtctttccaaaacCTGCATGGCTTTCGTTCAtctttgaaatgcaaatgaggAATTTTAATGAACCCAAAACATCTGTCCCAAAACGCGTAGGCTtcaaaaacactcaaaataatcctaataaataataatcgtGTTTTCTAAAGAAACATGTTCACTTTACAGATtcaatttatgcttttattcacGCAAACATCAAATATGGTCAATGAAAGCTCAAGTAAACTTGCTTTTGTGCACGAGACCCAAtgaggtttgtttttgttagtcaTGCAAGCTCTTGAGTGACTTCACACTCGGTTGGATTAAATTACTCAATTTAAATAGACTGCTTTTTTCTGTCTTCGCGGAGTCTTATTAGCTTCAAAGTTTTGGTTGCACTGGCTTTCGTTGAAGGATCTCGGATTTCATTAAAACGTCTTTATTTGCcttttaaagatgaacaaaggtttgaTTGGTTTGCGGtaacataagggtgagtaaataattagCTATCCTTTTACGATGGATTTTATACAGGATTCGAACACCCATGTATTTTTCAGCTCtctctgcttgttttttttgtatcattttacaCATTTGACATTTCAAGCAGCTCAGTggtggtgtgtttgtgtaataCTCTCTGTATAACAGACAAAAGCAGCAAGGATCCACTCAGACACACAAATACGGCCCACGTCTGAGCCGATCTTATAAATTCAGCAATCGCTCATCTTCAAAGATAATCAGTTGGTAAACACATTCATAACGGCCTATATCGGTCACATCTGGAGAGCGAGGAATCACAGTCTGTTTCTCTCACGTCTGTAACCTCCGTTTGCGATGCTGGCGGCGGCCTTGGTCTTGAATGTCCACTGGAGGGTCAGGGGTCAGAAAGCCATCGCACAGTCTCTGATACACAAGAGTGGAGTCTGAAGCCACAGCACACAAGAGCATCGGGGCACCTCTGTCCAATATACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13102 lncRNA upstream 102913 2443588 ~ 2445200 (+) True G8737
TU13075 lncRNA upstream 226926 2288286 ~ 2321187 (+) True G8716
TU13076 lncRNA upstream 258073 2288825 ~ 2290040 (+) True G8717
TU13062 lncRNA upstream 259897 2287346 ~ 2288216 (+) False sgip1b
TU13050 lncRNA upstream 294522 2249222 ~ 2253591 (+) True G8703
TU13145 lncRNA downstream 57201 2612522 ~ 2613104 (+) True G8764
XR_006252229.1 lncRNA downstream 61886 2617207 ~ 2618878 (+) False LOC122355548
TU13126 lncRNA downstream 61947 2617268 ~ 2669597 (+) True LOC122355548
TU13127 lncRNA downstream 61947 2617268 ~ 2619357 (+) False LOC122355548
TU13130 lncRNA downstream 83221 2638542 ~ 2669943 (+) False LOC122355548
XM_043254791.1 mRNA upstream 3550 2541915 ~ 2544563 (+) True imp3
XM_043261780.1 mRNA upstream 38103 2495943 ~ 2510010 (+) True LOC122360938
XM_043261741.1 mRNA upstream 86891 2453850 ~ 2461222 (+) True LOC122360901
XM_043258550.1 mRNA upstream 116656 2427557 ~ 2431457 (+) True LOC122358704
XM_043258526.1 mRNA upstream 128158 2406742 ~ 2419955 (+) False LOC122358652
XM_043254691.1 mRNA downstream 7856 2563177 ~ 2581265 (+) True abi1b
XM_043254714.1 mRNA downstream 7856 2563177 ~ 2581265 (+) False abi1b
XM_043254699.1 mRNA downstream 7856 2563177 ~ 2581265 (+) False abi1b
XM_043254707.1 mRNA downstream 7856 2563177 ~ 2581265 (+) False abi1b
XM_043254722.1 mRNA downstream 7856 2563177 ~ 2581265 (+) False abi1b
XR_006252635.1 other upstream 128158 2411165 ~ 2419955 (+) False LOC122358652
TU13086 other upstream 146368 2398954 ~ 2401745 (+) True G8725
TU13065 other upstream 272978 2270681 ~ 2275135 (+) False sgip1b
XR_006252584.1 other upstream 358748 2178766 ~ 2189365 (+) True LOC122358138
XR_006252583.1 other upstream 358748 2178766 ~ 2189365 (+) False LOC122358138
TU13140 other downstream 36313 2591634 ~ 2592758 (+) True G8760
TU13128 other downstream 61947 2617268 ~ 2669943 (+) False LOC122355548
TU13131 other downstream 61947 2617268 ~ 2669943 (+) False LOC122355548
XR_006247876.1 other downstream 62681 2618002 ~ 2618134 (+) True LOC122328998
XR_006247877.1 other downstream 62995 2618316 ~ 2618449 (+) True LOC122329004

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00031928 False 1691 mRNA 0.44 6 NC_007113.7 9958081 ~ 9971728 (-)