RNA id: XM_043254822.1


Basic Information

Item Value
RNA id XM_043254822.1
length 1702
RNA type mRNA
GC content 0.45
exon number 5
gene id zgc:55943
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 2548066 ~ 2555321 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATCAGATACTCTAAGCTCCACGCGAGACAACACGCCGCCGCGCTATTGCATGTTTATGTGAATTGCTTTGTTTGAGCACCGAATGCATGCTGCAGAACTCACGCCTGTGTCTGTCGGGTCAGGTGCTGTAGAGAGTGCCATGCAggaaggagaggagaggaagtgAGGCGATGGGCTGCACCTCAGCCAAGCAGTTGTCATCTGTACCCAGTGATGAAGAGGGCCGGGGTAAGGCCTACAGCAATGGAGACGCCTTCTCCGATGAGTACAAACTGAAAGGAGTCGAGAAGGTGAAGTACATGCATGGAGAAGAGGAGCGCACGAACACACGAAACCAAGAGAACTTGGAAAAGAGCACATTTTTGCACAAGGGCAGGCATAAAGATGCCACCGGGAATAGTAATAAGAtaagTATCCACTCTTCAGAGAGCCAGCAGGAgttcttcaggatgctggatgAGAAGATTGAAAAGGGACGGGACTACTGCTCGGAGGATGAGGATATGACATAGCATGCAGAGACATTTGACTCGCGCCAACATTGAGTCAATCCAGTCCCAAAGTTCTTTACACTTGCTTTCCATGCCTCCGTACCCAGCAAGTATTAATCTTCAAGAGTGTGGCTTCAAGTGACATCCAGCCCAGCTGTCCACTCCGTTTACAATTTACACACTCTCCCAAATGTCTTACAGGTCACTATTCGAGACTCTTGAGGACTAGTAATTAAACGGTATGGGGGCATGGAAAGGCCGTGGTTAAGGAGACTGGGATTCGGCCCAAGATTTGAATGGGAAAGCCATTATCAGACTGTTCCTCAATCCCTTGCCTTACACTACCCATAAGCCTTCTCCTACTCATAGACTACATACAGTGGAGAGAGCCATGCTACGAAACCTGGATTTCGCCCTCCCTTGGATATGGACACTACAGTCCGTACTAGCAGTGGAGATGATATCTCCCAAGGAGGACATTCCTACCGAGAGACTTGCGTGATTCTGTCCAGCTCATGCTGATGAGACGCAGTAGGTGAAAGCGCATGGACAGAAACACTAGGCCATTTCTAGCATtccaattgtttttttttaaacaaagtattTTTCACCCACgatgtattatgtatatgtcTTTTTGACCTTTTTCTTTGAGTTACGTTACAACGCTCAGGACAGCAGTGCTGTATGTATCATCACTAGATTTGTTTGTTAGGTGAAGGCTGTGCAGTTCCTTCAGGGCCGGTCTTGAGAACGCGTCGGAGGGAGGGAAACAGATCACAGCATCTAGCCGTGTTTAGAGACGCCACTTACAGCATCTTAAGGTCACGTAGTACTCATCTTACTCTATATAACAGGTGGATATCATACGTTCGCTTGACATTTATAGTCACTATTCTTGAGTCGAAATCCAGTACAAGTTTCAAAACCAGCCTTGAGAGAGTTTTACATGGATACGTTTTTATTACCGGGAAGTGCTTCTTCCTTTTACAGTATGACAGTAATTTGCCATAGCCTTAAGCACACAGTGTTTTCCTTTCTGAAATGATATACAACAGTAAGCcattaatttctgtattttcacacTAAAGTGAACAGTATCCCACATGTATGCTTAAGTTCTCGATGTACACAGTTGGGCCAAACAAAATTGCCAAAAATGCAAGTGTGATGCTGagtgaaagaataaataaatacacaatgaCCAACTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13102 lncRNA upstream 105086 2443588 ~ 2445200 (+) True G8737
TU13075 lncRNA upstream 229099 2288286 ~ 2321187 (+) True G8716
TU13076 lncRNA upstream 260246 2288825 ~ 2290040 (+) True G8717
TU13062 lncRNA upstream 262070 2287346 ~ 2288216 (+) False sgip1b
TU13050 lncRNA upstream 296695 2249222 ~ 2253591 (+) True G8703
TU13145 lncRNA downstream 58348 2612522 ~ 2613104 (+) True G8764
XR_006252229.1 lncRNA downstream 63033 2617207 ~ 2618878 (+) False LOC122355548
TU13126 lncRNA downstream 63094 2617268 ~ 2669597 (+) True LOC122355548
TU13127 lncRNA downstream 63094 2617268 ~ 2619357 (+) False LOC122355548
TU13130 lncRNA downstream 84368 2638542 ~ 2669943 (+) False LOC122355548
XM_043254791.1 mRNA upstream 5723 2541915 ~ 2544563 (+) True imp3
XM_043261780.1 mRNA upstream 40276 2495943 ~ 2510010 (+) True LOC122360938
XM_043261741.1 mRNA upstream 89064 2453850 ~ 2461222 (+) True LOC122360901
XM_043258550.1 mRNA upstream 118829 2427557 ~ 2431457 (+) True LOC122358704
XM_043258523.1 mRNA upstream 130331 2411169 ~ 2419955 (+) True LOC122358652
XM_043254691.1 mRNA downstream 9003 2563177 ~ 2581265 (+) True abi1b
XM_043254714.1 mRNA downstream 9003 2563177 ~ 2581265 (+) False abi1b
XM_043254699.1 mRNA downstream 9003 2563177 ~ 2581265 (+) False abi1b
XM_043254707.1 mRNA downstream 9003 2563177 ~ 2581265 (+) False abi1b
XM_043254722.1 mRNA downstream 9003 2563177 ~ 2581265 (+) False abi1b
XR_006252635.1 other upstream 130331 2411165 ~ 2419955 (+) False LOC122358652
TU13086 other upstream 148541 2398954 ~ 2401745 (+) True G8725
TU13065 other upstream 275151 2270681 ~ 2275135 (+) False sgip1b
XR_006252584.1 other upstream 360921 2178766 ~ 2189365 (+) True LOC122358138
TU13140 other downstream 37460 2591634 ~ 2592758 (+) True G8760
TU13128 other downstream 63094 2617268 ~ 2669943 (+) False LOC122355548
TU13131 other downstream 63094 2617268 ~ 2669943 (+) False LOC122355548
XR_006247876.1 other downstream 63828 2618002 ~ 2618134 (+) True LOC122328998
XR_006247877.1 other downstream 64142 2618316 ~ 2618449 (+) True LOC122329004

Expression Profile