RNA id: TU13127


Basic Information

Item Value
RNA id TU13127
length 834
lncRNA type inter_gene
GC content 0.40
exon number 5
gene id LOC122355548
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 2617207 ~ 2669943 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACTGGGTCCTTCGTTCCCTCTGAGAGACTCTGGTGACCGTCCACGTGGAGATGATTAAGTCGAAACGAGGGTCATCGTGAGCTCTTAAAGAGTGAAAGCAGCAGGAAATGGCTGGTGCACCGTGTCACGTGTTAACACCATGAGGACCGGGAGAAAcgtgtgctttttgagctccagGTGAGCAGACCTGCAGCATGGACGAGGTTATGTGACGCCTGCTGTGCagGGTCTGTATTCAAGGAGTGATCCTTTCTAGCGGAGGTAACTTCCCCAGCATTCAAAGACTAGTGACGCTGTTTTCTGCGCGTGTGAATCTGCGCTAcattcttttataaataaaaccttcTGCTTAACagcctgtctttttttttttttttttttttttttttttttttttttttgtatgtgcgTGGTTTATGGTCTCTTGAAAAATCAGTCGAGTGTTTTGTGGTACgcagtattaaaaaaagtaaatggtcCAAACTCAATTTCCACATTAGAAATAGTTGTTCCACTTTTTGCTTGCTGACTTCTAGGgcagtaaaaacaaatcatgcCTGCTGAATTGAAGAAAATGGTTTAATTCGGACGACTTGCTCTCATTAGGAAGTTGTGATTTGGTGCCAGAATGATTTGAAATGCTAACAAGTGAGTTTTGTACACAAAATGGACTGTGGAGAATTAAATTTTCGTTAGATTTGAAATGGTGAAACCGTTTTAGAAATACGCCTCTTAATAAACGTTTACACAATGTTTGAATTGAATGTATACATTTCAACCATCAGTTTCAGAGAAATGAAATGTAGCGTCTTTTGCAATCGCTCTTTACCTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13145 lncRNA upstream 4164 2612522 ~ 2613104 (+) True G8764
TU13085 lncRNA upstream 7749 2511622 ~ 2609519 (+) True G8724
TU13102 lncRNA upstream 172068 2443588 ~ 2445200 (+) True G8737
TU13075 lncRNA upstream 296081 2288286 ~ 2321187 (+) True G8716
TU13130 lncRNA downstream 19185 2638542 ~ 2669943 (+) False LOC122355548
TU13183 lncRNA downstream 199715 2819072 ~ 2872749 (+) False G8794
TU13184 lncRNA downstream 199715 2819072 ~ 2856409 (+) False G8794
TU13185 lncRNA downstream 199715 2819072 ~ 2861106 (+) True G8794
TU13209 lncRNA downstream 292934 2912291 ~ 2912787 (+) True G8816
XM_043253930.1 mRNA upstream 10412 2598768 ~ 2606856 (+) True ap2m1a
XM_043253949.1 mRNA upstream 10412 2598768 ~ 2606856 (+) False ap2m1a
XM_043253940.1 mRNA upstream 10412 2598778 ~ 2606856 (+) False ap2m1a
XM_043254707.1 mRNA upstream 36003 2563177 ~ 2581265 (+) False abi1b
XM_043220789.1 mRNA downstream 1485 2620842 ~ 2632556 (+) True dvl3a
XM_043224252.1 mRNA downstream 25638 2644995 ~ 2657785 (+) False LOC122328513
XM_043224241.1 mRNA downstream 25760 2645117 ~ 2657785 (+) True LOC122328513
XM_043218780.1 mRNA downstream 39046 2658403 ~ 2661029 (+) True ahsg2
XM_043255474.1 mRNA downstream 56013 2675370 ~ 2689627 (+) True LOC122356587
TU13140 other upstream 24510 2591634 ~ 2592758 (+) True G8760
TU13121 other upstream 61947 2548113 ~ 2555321 (+) False zgc:55943
TU13123 other upstream 61947 2549892 ~ 2555321 (+) False zgc:55943
TU13124 other upstream 61947 2549892 ~ 2555321 (+) True zgc:55943
XR_006252635.1 other upstream 197313 2411165 ~ 2419955 (+) False LOC122358652
TU13150 other downstream 15884 2635241 ~ 2636586 (+) False G8768
TU13151 other downstream 15884 2635241 ~ 2636586 (+) True G8768
XR_006252354.1 other downstream 56013 2675370 ~ 2689627 (+) False LOC122356587
XR_006252450.1 other downstream 110279 2729636 ~ 2739907 (+) False kdsr
TU13709 other downstream 996125 3615482 ~ 3617043 (+) True G9154

Expression Profile