RNA id: TU13131


Basic Information

Item Value
RNA id TU13131
length 2048
RNA type TUCP
GC content 0.38
exon number 7
gene id LOC122355548
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 2617207 ~ 2669943 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACTGGGTCCTTCGTTCCCTCTGAGAGACTCTGGTGACCGTCCACGTGGAGATGATTAAGTCGAAACGAGGGTCATCGTGAGCTCTTAAAGAGTGAAAGCAGCAGGAAATGGCTGGTGCACCGTGTCACGTGTTAACACCATGAGGACCGGGAGAAAcgtgtgctttttgagctccagGTGAGCAGACCTGCAGCATGGACGAGGTTATGTGACGCCTGCTGTGCagGGTCTGTATTCAAGGAGTGATCCTTTCTAGCGGAGGTAACTTCCCCAGCATTCAAAGACTAGTGACGCTGTTTTCTGCGCGTGTGAATCTGCGCTAcattcttttataaataaaaccttcTGCTTAACagcctgtcttttttttttttttttttttttttttttttttttttttTTTTCTGGTTGGAATAGGTTTATTTGATCTGTCTGTAAACAAGGTGGTTAAATCatggcatttgttttttttctttccttccacGCAAATTGAGTTGAATATCAGCTGGTCAGGTGTAAGAGGGAGAGAACTGGACATAATTTGATGCTTTTCCTTAAATCTGTACATTTTCCATGCGCCCTGGAGGTTGATTTACGCCAAATATCCCAAAGGTGCCACTGAAGAATTGACTCCTCGCAAAGGCAGCAGTTAAAATCCATCTCACAGTAGCAACAGATCAGATCTACATTATGGCACAGGATACACAGCTTTATTTAACAAGTTTCCACAATACAACTGACTTCGACTAGTGGTCTTTTTCCAACTAATACCACCATATCCCAGAAAAAGTTAGTGTACACAGTTTACttcagtatctttttttttttttttttgtctatttaatGAAGCATTTGTACCGTGCTATGACAGTTTGATACATCGCAATTAAGTAGTTTACAAGGCAATGACTTCCAAATGGTTTCATTCTTGAAAATAACAgattaaaagtcaaaaatgtttaagaattttGAGGTGACATGTTAACAATAAGACTGCCATTTCATCTATTCAAGACATTCATGAGATGAGCTCTCAGGTAGTTATcatacatgattttttttttttttttttttttttaaattttcaaactgTTAAGCCAGTAATAGTGTTTTAATAGAAATGAGCTTGGTGTTACATTGTGTATTTGAAGTGTTGAGAATTTAGTGTTATAAAGTCAGCAACAGATGAAGCTAGCAGTCGTCCTTCACAACAACAGTTTGGAGCAATTCTGTTAATCCTGCCGGATGCAACAAAAACTTGGTCCTATCAGAGAACCCAAAGTGAAATGGACAGAACCAGGAGGTACATTGGGATGGCAGcactttgtcttaaaaaaaagaaaggaaaaaaaaaaaaaaaaaaaaaaagagaaagaaaatgacaaacaaaatgaaaaaaaaaaaaaaaaaaacattttacaggaGCTGGCAAACAACAATTATAAGTGCCTGAGCTATGTAGCGATGGAATGTCCATACAGAGTCCGGGATGCAAAGGCTCTTGGGGAACAACTTAACCCAAACCTTGTAAATGCTGATCTGCCACCACACTCAAAATATTCCAACATTAGACCAATGACTTACAAGACCACATCCAAATACAACAGCAAAAGCATTTGATATAAGGTTCTCAAACTAAAGAAGGTACAGGGCATATAATAGTAGCCGGAGCAAAGGTGGTGCAGTTCACGAGGGCAGGGGCATAGGTGCTTACTAACTTAATTCAGGATCAAACcgagcaaagaaaataaaaacgataataaaaaggaggaagaaaaaaaaaagtctttcccCCCGATGACACGGGGACATTATAGGATATTATCACCAATCTTCCCTTGATTGCTATTAAATTTTTTCAAGACATTAACTGCTTGAAGGAGAAAGCTTAACAGCaaacttctttcttctttctgtccCTCAAGTGAAACTAAACAAGCTTAATTACATTAGAACCCTGAATCCCTCAAGTATTTTGCCATTGAGTATGCCTTCTTATTCAATCCGCCTCCATGGACCCCTTCTTTGCCCATTACAAGAACCAAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13145 lncRNA upstream 4164 2612522 ~ 2613104 (+) True G8764
TU13085 lncRNA upstream 7749 2511622 ~ 2609519 (+) True G8724
TU13102 lncRNA upstream 172068 2443588 ~ 2445200 (+) True G8737
TU13075 lncRNA upstream 296081 2288286 ~ 2321187 (+) True G8716
TU13183 lncRNA downstream 149129 2819072 ~ 2872749 (+) False G8794
TU13184 lncRNA downstream 149129 2819072 ~ 2856409 (+) False G8794
TU13185 lncRNA downstream 149129 2819072 ~ 2861106 (+) True G8794
TU13209 lncRNA downstream 242348 2912291 ~ 2912787 (+) True G8816
TU13511 lncRNA downstream 446905 3116848 ~ 3121053 (+) True G9022
XM_043253930.1 mRNA upstream 10412 2598768 ~ 2606856 (+) True ap2m1a
XM_043253949.1 mRNA upstream 10412 2598768 ~ 2606856 (+) False ap2m1a
XM_043253940.1 mRNA upstream 10412 2598778 ~ 2606856 (+) False ap2m1a
XM_043254707.1 mRNA upstream 36003 2563177 ~ 2581265 (+) False abi1b
XM_043255474.1 mRNA downstream 5427 2675370 ~ 2689627 (+) True LOC122356587
XM_043255488.1 mRNA downstream 5429 2675372 ~ 2689627 (+) False LOC122356587
XM_043217897.1 mRNA downstream 25478 2695421 ~ 2701972 (+) True LOC122323799
XM_043256604.1 mRNA downstream 47630 2717573 ~ 2729493 (+) True vps4b
XM_043256611.1 mRNA downstream 52268 2722211 ~ 2729493 (+) False vps4b
TU13140 other upstream 24510 2591634 ~ 2592758 (+) True G8760
TU13121 other upstream 61947 2548113 ~ 2555321 (+) False zgc:55943
TU13123 other upstream 61947 2549892 ~ 2555321 (+) False zgc:55943
TU13124 other upstream 61947 2549892 ~ 2555321 (+) True zgc:55943
XR_006252635.1 other upstream 197313 2411165 ~ 2419955 (+) False LOC122358652
XR_006252354.1 other downstream 5427 2675370 ~ 2689627 (+) False LOC122356587
XR_006252450.1 other downstream 59693 2729636 ~ 2739907 (+) False kdsr
TU13709 other downstream 945539 3615482 ~ 3617043 (+) True G9154
TU13731 other downstream 1006482 3676425 ~ 3678934 (+) True G9173
TU14011 other downstream 1552296 4222239 ~ 4223112 (+) True G9361

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU28532 True 2233 lncRNA 0.34 2 CI01000004 1978730 ~ 2027792 (+)
bowfin (Amia calva) TU28532 True 203 lncRNA 0.39 2 CM030123.1 11570952 ~ 11573862 (+)