RNA id: XR_006252229.1


Basic Information

Item Value
RNA id XR_006252229.1
length 416
lncRNA type inter_gene
GC content 0.50
exon number 5
gene id LOC122355548
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 2617207 ~ 2669943 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTAGGTTGAGGAAGCGAGTAGGCTCAGGAATTGCGCTCAGGCACTTTCTCGACCGCCTAAACTGGGTCCTTCGTTCCCTCTGAGAGACTCTGGTGACCGTCCACGTGGAGATGATTAAGTCGAAACGAGGGTCATCGTGAGCTCTTAAAGAGTGAAAGCAGCAGGAAATGGCTGGTGCACCGTGTCACGTGTTAACACCATGAGGACCGGGAGAAAcgtgtgctttttgagctccagGTGAGCAGACCTGCAGCATGGACGAGGTTATGTGACGCCTGCTGTGCagGGTCTGTATTCAAGGAGTGATCCTTTCTAGCGGAGGTAACTTCCCCAGCATTCAAAGACTAGTGACGCTGTTTTCTGCGCGTGTGAATCTGCGCTAcattcttttataaataaaaccttcTGCTTAACa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13145 lncRNA upstream 4103 2612522 ~ 2613104 (+) True G8764
TU13085 lncRNA upstream 7688 2511622 ~ 2609519 (+) True G8724
TU13102 lncRNA upstream 172007 2443588 ~ 2445200 (+) True G8737
TU13075 lncRNA upstream 296020 2288286 ~ 2321187 (+) True G8716
TU13076 lncRNA upstream 327167 2288825 ~ 2290040 (+) True G8717
TU13130 lncRNA downstream 19664 2638542 ~ 2669943 (+) False LOC122355548
TU13183 lncRNA downstream 200194 2819072 ~ 2872749 (+) False G8794
TU13184 lncRNA downstream 200194 2819072 ~ 2856409 (+) False G8794
TU13185 lncRNA downstream 200194 2819072 ~ 2861106 (+) True G8794
TU13209 lncRNA downstream 293413 2912291 ~ 2912787 (+) True G8816
XM_043253930.1 mRNA upstream 10351 2598768 ~ 2606856 (+) True ap2m1a
XM_043253949.1 mRNA upstream 10351 2598768 ~ 2606856 (+) False ap2m1a
XM_043253940.1 mRNA upstream 10351 2598778 ~ 2606856 (+) False ap2m1a
XM_043254707.1 mRNA upstream 35942 2563177 ~ 2581265 (+) False abi1b
XM_043220789.1 mRNA downstream 1964 2620842 ~ 2632556 (+) True dvl3a
XM_043224252.1 mRNA downstream 26117 2644995 ~ 2657785 (+) False LOC122328513
XM_043224241.1 mRNA downstream 26239 2645117 ~ 2657785 (+) True LOC122328513
XM_043218780.1 mRNA downstream 39525 2658403 ~ 2661029 (+) True ahsg2
XM_043255474.1 mRNA downstream 56492 2675370 ~ 2689627 (+) True LOC122356587
TU13140 other upstream 24449 2591634 ~ 2592758 (+) True G8760
TU13121 other upstream 61886 2548113 ~ 2555321 (+) False zgc:55943
TU13123 other upstream 61886 2549892 ~ 2555321 (+) False zgc:55943
TU13124 other upstream 61886 2549892 ~ 2555321 (+) True zgc:55943
XR_006252635.1 other upstream 197252 2411165 ~ 2419955 (+) False LOC122358652
TU13150 other downstream 16363 2635241 ~ 2636586 (+) False G8768
TU13151 other downstream 16363 2635241 ~ 2636586 (+) True G8768
XR_006252354.1 other downstream 56492 2675370 ~ 2689627 (+) False LOC122356587
XR_006252450.1 other downstream 110758 2729636 ~ 2739907 (+) False kdsr
TU13709 other downstream 996604 3615482 ~ 3617043 (+) True G9154

Expression Profile