RNA id: TU13183


Basic Information

Item Value
RNA id TU13183
length 1331
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G8794
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 2819072 ~ 2872749 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

taaaatattttattatttttttgtaaatgtaaattcaatTCCTCAAATACCAAACCCTATATCGCTCTGTGTACTTCAAAAAAGCTTCAGTTTCCAAAACAATTTAGACTACTATAcagagcaaaagaaaagaaagaaagaaagaaaaaaaacactaggaAATTGATGTATTTTACAAGACAAGGAAAATATCCATGAAACAATTTTGTTACAGCTGTTCattgagaaaaaatatatacaactgACTCTTTTGAaaaaattcatgcccagtacaATACAAAGTCTAAACTGTCCATTTTTCAACGTGAAATTGTGCACACAGAAACTCCCAAATTGAAATAACAAGgcatgtgaaatgtgaaaaaacagtttttggCTACAAAATGAATAGCACTCTCTTAACAGATGCTTCACTTCAATCAATAAAACTAATACAAGCATATGTTTTTCATATGTacatcactttcagagagttaCGCTGACCCTTCTTTCCCAGCGAATCCCGCTCATACCATCTCCAACAAGCAAACTTTTCAAATCAATGACTCCTCGTTCTTGCACGACGACATTGCAGGTTTATAAAATCCAGACGAcggcttttattaaaaaaacaaaaatgagcttGATCTATTTGTGCCTGTTCTCAGGTTACGCTTGTGATCTCGTAATCGGTTCGTGAGGTTTAAAGTTCGTTTCACAGTTATCCCTACGTCTACGATCCCGCCTGATTCACTAGGTTTCGAATTTCCGTGTCGCTGCTATCCGTAacataaaatggaataaaatgaaatgaaaaccgACAAAATGGTCAGCAATAATGTATAAACCACAAAGTCACTACGAATACCACATCCTAAGCACGGAGAAAATACTTTTCTTGTGAAATCACCTTTGTAATTCTGTACAGTTTCGTAATTACACGTGTACACGTGGTATCATGATGTGTCTTTGTTAAATAATTCCGAAGAGGGAAAAGAaaggagaaacaaaaaaagcgaAACAAAACGGCACATCTAAAATATCTGAACATCAATATGAATAAGGTAGTGAATAAGGTAGTATTTGGTCAATCATTCCGATATTTCTCTATATTTACACGGTATTTACAGATGTAACAGAATCTCAAACTGCGTGCAAGAATCGCAGTCGGGCTTCCTTTTGTTCGGCATAAAACCGCTTTTAAAAATAGGCccattcattcactcacacagtaataaatacaaaacacctTTATTTTCTTACACTAAACAATGAGAGATATCTAGGATAAAACTGACTCATGGAATCAagtattttgagttttttttttttttttttttttTTTTagttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13130 lncRNA upstream 149129 2638542 ~ 2669943 (+) False LOC122355548
TU13126 lncRNA upstream 149475 2617268 ~ 2669597 (+) True LOC122355548
TU13127 lncRNA upstream 199715 2617268 ~ 2619357 (+) False LOC122355548
XR_006252229.1 lncRNA upstream 200194 2617207 ~ 2618878 (+) False LOC122355548
TU13145 lncRNA upstream 205968 2612522 ~ 2613104 (+) True G8764
TU13209 lncRNA downstream 39542 2912291 ~ 2912787 (+) True G8816
TU13511 lncRNA downstream 244099 3116848 ~ 3121053 (+) True G9022
TU13515 lncRNA downstream 283851 3156600 ~ 3164823 (+) False gpr158b
TU13665 lncRNA downstream 650521 3523270 ~ 3524571 (+) True G9130
TU13692 lncRNA downstream 690959 3563708 ~ 3564239 (+) True G9141
XM_043260587.1 mRNA upstream 38394 2742715 ~ 2780678 (+) True bcl2b
XM_043256623.1 mRNA upstream 79165 2729636 ~ 2739907 (+) True kdsr
XM_043256604.1 mRNA upstream 89579 2717573 ~ 2729493 (+) True vps4b
XM_043256611.1 mRNA upstream 89579 2722211 ~ 2729493 (+) False vps4b
XM_043217897.1 mRNA upstream 117100 2695421 ~ 2701972 (+) True LOC122323799
XM_043222200.1 mRNA downstream 82960 2955709 ~ 3064602 (+) False dpp6b
XM_043222186.1 mRNA downstream 97469 2970218 ~ 3064602 (+) False dpp6b
XM_043222193.1 mRNA downstream 105023 2977772 ~ 3064602 (+) True dpp6b
XM_043222206.1 mRNA downstream 140371 3013120 ~ 3064602 (+) False dpp6b
XM_043261211.1 mRNA downstream 250375 3123124 ~ 3163198 (+) True gpr158b
XR_006252450.1 other upstream 79165 2729636 ~ 2739907 (+) False kdsr
XR_006252354.1 other upstream 129445 2675370 ~ 2689627 (+) False LOC122356587
TU13128 other upstream 149129 2617268 ~ 2669943 (+) False LOC122355548
TU13131 other upstream 149129 2617268 ~ 2669943 (+) False LOC122355548
TU13150 other upstream 182486 2635241 ~ 2636586 (+) False G8768
TU13709 other downstream 742733 3615482 ~ 3617043 (+) True G9154
TU13731 other downstream 803676 3676425 ~ 3678934 (+) True G9173
TU14011 other downstream 1349490 4222239 ~ 4223112 (+) True G9361
TU14081 other downstream 1691148 4563897 ~ 4570094 (+) False G9416
XR_006247003.1 other downstream 1706525 4579274 ~ 4588478 (+) True mylk4a

Expression Profile