RNA id: TU13209


Basic Information

Item Value
RNA id TU13209
length 497
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G8816
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 2912291 ~ 2912787 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTCCAGAAAACCTACGGCGTTTAATCCACAGGCAGAAAGCGGCCGCTTTCCTTCGGTTCGAACGGATCACTTTTCTTTATTCCGCTTCATCCCACATCGCCAAATCCTCGCGGGTTACATCCCTCATCCGAAAACAAGCCATACCGACCGCTATCTGAGCTCCTGCGAGGCGGCGACAGGAGCCGAGCCCCGGCCGCGTTCGGGGATAACACGGCCGAAAAGATATATATCCTCGAACGAGGGGAAAACCGAAAGCAGAGTTCGCTTTCGAGCTTTCAATCCTGGCGATTTCGATCGGCTCGCGGAGCAAGCCGCAATTTCGAGCGACACTTTATTAACGCCAAAAACATCGAGGTGATCTCCTCGCCCGGGTGTTCGCAATTTGCACAGGCAAAAAAAACGCTCGCTCGACGCGACTGTAGAGAGGAGAGTGACGTAAAACgttacatttctgcattagtACAAATATTAAAGTTGTAGCTCTGACTCCATGGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13183 lncRNA upstream 39542 2819072 ~ 2872749 (+) False G8794
TU13185 lncRNA upstream 51185 2819072 ~ 2861106 (+) True G8794
TU13184 lncRNA upstream 55882 2819072 ~ 2856409 (+) False G8794
TU13130 lncRNA upstream 242348 2638542 ~ 2669943 (+) False LOC122355548
TU13126 lncRNA upstream 242694 2617268 ~ 2669597 (+) True LOC122355548
TU13511 lncRNA downstream 204061 3116848 ~ 3121053 (+) True G9022
TU13515 lncRNA downstream 243813 3156600 ~ 3164823 (+) False gpr158b
TU13665 lncRNA downstream 610483 3523270 ~ 3524571 (+) True G9130
TU13692 lncRNA downstream 650921 3563708 ~ 3564239 (+) True G9141
TU13693 lncRNA downstream 659650 3572437 ~ 3573075 (+) True G9142
XM_043260587.1 mRNA upstream 131613 2742715 ~ 2780678 (+) True bcl2b
XM_043256623.1 mRNA upstream 172384 2729636 ~ 2739907 (+) True kdsr
XM_043256604.1 mRNA upstream 182798 2717573 ~ 2729493 (+) True vps4b
XM_043256611.1 mRNA upstream 182798 2722211 ~ 2729493 (+) False vps4b
XM_043217897.1 mRNA upstream 210319 2695421 ~ 2701972 (+) True LOC122323799
XM_043222200.1 mRNA downstream 42922 2955709 ~ 3064602 (+) False dpp6b
XM_043222186.1 mRNA downstream 57431 2970218 ~ 3064602 (+) False dpp6b
XM_043222193.1 mRNA downstream 64985 2977772 ~ 3064602 (+) True dpp6b
XM_043222206.1 mRNA downstream 100333 3013120 ~ 3064602 (+) False dpp6b
XM_043261211.1 mRNA downstream 210337 3123124 ~ 3163198 (+) True gpr158b
XR_006252450.1 other upstream 172384 2729636 ~ 2739907 (+) False kdsr
XR_006252354.1 other upstream 222664 2675370 ~ 2689627 (+) False LOC122356587
TU13150 other upstream 275705 2635241 ~ 2636586 (+) False G8768
TU13151 other upstream 275705 2635241 ~ 2636586 (+) True G8768
XR_006247877.1 other upstream 293842 2618316 ~ 2618449 (+) True LOC122329004
TU13709 other downstream 702695 3615482 ~ 3617043 (+) True G9154
TU13731 other downstream 763638 3676425 ~ 3678934 (+) True G9173
TU14011 other downstream 1309452 4222239 ~ 4223112 (+) True G9361
TU14081 other downstream 1651110 4563897 ~ 4570094 (+) False G9416
XR_006247003.1 other downstream 1666487 4579274 ~ 4588478 (+) True mylk4a

Expression Profile