RNA id: TU13692


Basic Information

Item Value
RNA id TU13692
length 532
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G9141
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 3563708 ~ 3564239 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttatttgtgaGCTCGACAGTCGCACGCACGGGATTGTGGGATAGGCACAGGATTCGTCTCGATCAGATCAGATGAAGGTACAGTATGGCAGTAGATGATGACTGGATTCAGACGGATACACCTTATTGTGCTGCTCAGGTATTCCCCTTACCTTACCCACACTGCCCTGCTTTAATGTCCTCGCTGATCAGCTCAGTGTTCGGTCTGTCGCTCCTCCGTCTGACGCAGCGCTGGCAGAGCACTATCACTGTACCGGCTGACCAGGCCAGCACTGTACCTACACCGAAGATGACCAAACCTATGGCCACAAAGAACAGGTAGTCCTGCTGAGCCAGGCCCGGATGGCACTGTCTTCTCAGCCAAAGGCCCAGCTCTGAGAGACGCTGCCCTCGTAAGTGTAGTGGACCGTTGCACACCGTCTGGCCCTCTTCTGCTCACATAAAACACAAGAAAGCTTCCTTTAACCCTGTAAACATTTGTATTGCTGGTAGGCTATTATCAGCTTTATAAAGCCTTAAGTCATAACCAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13665 lncRNA upstream 39137 3523270 ~ 3524571 (+) True G9130
TU13515 lncRNA upstream 398885 3156600 ~ 3164823 (+) False gpr158b
TU13511 lncRNA upstream 442655 3116848 ~ 3121053 (+) True G9022
TU13209 lncRNA upstream 650921 2912291 ~ 2912787 (+) True G8816
TU13185 lncRNA upstream 702602 2819072 ~ 2861106 (+) True G8794
TU13693 lncRNA downstream 8198 3572437 ~ 3573075 (+) True G9142
TU13801 lncRNA downstream 216301 3780540 ~ 3780778 (+) True G9232
TU13803 lncRNA downstream 220100 3784339 ~ 3784667 (+) True G9234
TU13804 lncRNA downstream 220678 3784917 ~ 3785295 (+) True G9235
TU13796 lncRNA downstream 222761 3787000 ~ 3790339 (+) False LOC122355245
XM_043253654.1 mRNA upstream 838 3550235 ~ 3562870 (+) True zyg11l
XM_043253664.1 mRNA upstream 838 3550235 ~ 3562870 (+) False zyg11l
XM_043253680.1 mRNA upstream 838 3550235 ~ 3562870 (+) False zyg11l
XM_043253673.1 mRNA upstream 1201 3550235 ~ 3562507 (+) False zyg11l
XM_043260785.1 mRNA upstream 40932 3512893 ~ 3522776 (+) False guk1a
XM_043261096.1 mRNA downstream 11417 3575656 ~ 3584040 (+) True serbp1b
XM_043264326.1 mRNA downstream 21102 3585341 ~ 3590132 (+) True LOC122362766
XM_043264332.1 mRNA downstream 21102 3585341 ~ 3590132 (+) False LOC122362766
XM_043264309.1 mRNA downstream 93776 3658015 ~ 3664392 (+) True usp14
XM_043253319.1 mRNA downstream 191932 3756171 ~ 3789633 (+) False LOC122355245
XR_006252450.1 other upstream 823801 2729636 ~ 2739907 (+) False kdsr
XR_006252354.1 other upstream 874081 2675370 ~ 2689627 (+) False LOC122356587
TU13150 other upstream 927122 2635241 ~ 2636586 (+) False G8768
TU13151 other upstream 927122 2635241 ~ 2636586 (+) True G8768
XR_006247877.1 other upstream 945259 2618316 ~ 2618449 (+) True LOC122329004
TU13709 other downstream 51243 3615482 ~ 3617043 (+) True G9154
TU13731 other downstream 112186 3676425 ~ 3678934 (+) True G9173
TU14011 other downstream 658000 4222239 ~ 4223112 (+) True G9361
TU14081 other downstream 999658 4563897 ~ 4570094 (+) False G9416
XR_006247003.1 other downstream 1015035 4579274 ~ 4588478 (+) True mylk4a

Expression Profile