RNA id: TU13731


Basic Information

Item Value
RNA id TU13731
length 2426
RNA type TUCP
GC content 0.44
exon number 2
gene id G9173
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 3676425 ~ 3678934 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGTCAGGGTGAGGTGACAATGACATATACAAAGTTTGGGGTAAATGTCTCCAATCTTTGCAGACGATACAGGCTCAGATACAGTTTGGCATCTTTAGAGCAAATTCATCTTTACACTAAATTCAAAATGGCCGACACCCAAAATGGCTGACATGGAACAACTGGGTATGTTCACcagttttgtgatttttggCCAAAGCATTCAGAATTCAGgagcaaaaatatgcattttccaTATCTCCTCACCTCTTGGGGGCACAGTGCCGAAACAGTGCAGGTAGCCTCAGGTCATGCTTTTTATAACACATACCAAGTTTGGTGTCAATATGCCTAACTGTTGCGGCGATATAGTCTCTCGTCCATTTTTGCATGGCTTTTGTAGAATTTGTTCGCTAGGTATTCGGAAAGGGTTTGACAAATGAACTTGAATTCCACAACTTTTTGCCTCCACAGTCTGAAGTTGATCGGATTCAATTTTCGTGACAATTGGTGCAATGGTCTAGGACGGGTTTGAAAAAgtaggttaaaaataaacattgcaattttagaatttttgtgTCCATTAAACTCAGCACGAGGAATCAGACTCTACGGTTGCTACGGTTACTGATGAGACTGTCCTCTATCACTGCGCAAAATTATGCAACTTTCCTGCAAACTGCCATAGACTTGAggcggaagaagaagaaaaagaataataGCGGTAATAATTTCAATAGGTGCCTCCGCACCTTCTGTGTTTGGCCCCtaattaaattacacaaaacTATAAGTACAATGTCTACACACAGTAGGTGCACTGttccaaatgattaatttaaatgtaagtacacagcagttaaggccacctaatctTGATGACATTATAAGGGGACAtcagagaacagtacaaattaataaaaaaaaggcatgaCCCTGAAAGAGTacaacatgtacattttaagaCATTATGAAACTGAGCATATCATTAAActtaaacaaaaccaaaatagcaCCCCTTATATCGTGAAGCAAAATGATACAGTTTTTGACATTGTTCTTCATCACTGAGTTGATCTGAATCTCACAGCTGAAACTGCAGGCTTCGAAGATGATGATGAACTGAATTCTCTGTGAATAATTAGATAATGTTTCTTTGTCATGCAACTTGTAATGACTGGTTAGTATGGATTCATCCAGGTTATATTTTATTGCTTGATGAATTACTCGTTGAGGATGCGGCGTCAGACCCGATGACGATCTACTGAGAGTGAACGCTTTTTGCATGACAGCGCAGAGCAGATGATTGTTTGAAACACTTCCCACATGCATTGCACTGATACGGCTTCTCTCCCGTGTGGATCCTCTCATGTCTTTTTAGGTCTCTTGAATCAGTGAATCTTTTGTCACAGTGCGCACACGTgaaaggtttctctccggtgtgaatcctcTCGTGTATAATCCGATTTGCCGACTGACTGAATCTCTTGTCACAGTACGAACACTTataaggtttctctccggtgtggatcatCTCGTGCCTCTTTAGGTTTTCGGACATATTGAATCTCTTGTCGCAGCGCGAGCACTtgtaaggtttctctccggtgtggctCTTCTCGTGCCTTTGGAGGATTCTCGGCCAACTGAATCTCTTGTCGCAGTGCGAGCACTTGtagggtttctctccggtgtggatcctctgATGAAATTTTAAATTGGTCGccgaaataaaagtcttctcgCACTCAAAGCACATGTACTCTCTCACACCGGTGTGTATTTTCTGATGTGCTTTCAAATTCTGCAGACACGAAAAACTCTTTCCGCACGAACAACACGGATGCGGCTTCTCCTTTGTGTGAACTTTCAGGTGCATCTTCAGGTCCGAAGGCCGCAGACACATTTTACCGCACTGATCGCACATGCACAGGTTCTCTCTCGTGTGGATGTTCGTGTGTACCTTCAGGTGAGCCGAGTGCGCAAATCTCTTCCCACACTCATCGCAAGTAAACGGTTTCTCTCCCGTATGAACTTTCATGTGCGCCGTGAGCTGTCCTTTTTGCGCGAAGCACTTCCCACAGCGATCGCATGCGTATggcttctctcccgtgtgaGTCCTCTCGTGCGTCTTCAGGACTCCTGAGCGACTGAATCTTTTGTCGCAGTTTGAACACTTGTACGGTTTTTCTCCGGTGTGAGTCCTCTCGTGTGCTTTCAGGTGTCCCGACCAATTGAATCCCATGTCGCAGTGTGCACACTTGTAccgtttctctccggtgtgcaCTCTCAGGTGAACATTAAGACTCTGTTTGTACgcgaaactctttccacactgagcgCAGGTGAACGATTTCTCAGCGCCtgttttcttcaaaacattctGAGAGCAGCTCGGAGGTTTTTCTCCAGTTTTGACGTGATTTTGCTCCTCAACTTCACGCAGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13693 lncRNA upstream 103350 3572437 ~ 3573075 (+) True G9142
TU13692 lncRNA upstream 112186 3563708 ~ 3564239 (+) True G9141
TU13665 lncRNA upstream 151854 3523270 ~ 3524571 (+) True G9130
TU13515 lncRNA upstream 511602 3156600 ~ 3164823 (+) False gpr158b
TU13511 lncRNA upstream 555372 3116848 ~ 3121053 (+) True G9022
TU13801 lncRNA downstream 101606 3780540 ~ 3780778 (+) True G9232
TU13803 lncRNA downstream 105405 3784339 ~ 3784667 (+) True G9234
TU13804 lncRNA downstream 105983 3784917 ~ 3785295 (+) True G9235
TU13796 lncRNA downstream 108066 3787000 ~ 3790339 (+) False LOC122355245
TU13810 lncRNA downstream 207148 3886082 ~ 3916483 (+) True G9241
XM_043264309.1 mRNA upstream 12033 3658015 ~ 3664392 (+) True usp14
XM_043264326.1 mRNA upstream 86293 3585341 ~ 3590132 (+) True LOC122362766
XM_043264332.1 mRNA upstream 86293 3585341 ~ 3590132 (+) False LOC122362766
XM_043261096.1 mRNA upstream 92385 3575656 ~ 3584040 (+) True serbp1b
XM_043253680.1 mRNA upstream 113555 3550235 ~ 3562870 (+) False zyg11l
XM_043253319.1 mRNA downstream 77237 3756171 ~ 3789633 (+) False LOC122355245
XM_043253327.1 mRNA downstream 77237 3756171 ~ 3789633 (+) False LOC122355245
XM_043253336.1 mRNA downstream 77237 3756171 ~ 3789633 (+) True LOC122355245
XM_043254140.1 mRNA downstream 134379 3813313 ~ 3875726 (+) True pth1r
XM_043258723.1 mRNA downstream 272349 3951283 ~ 3991543 (+) True slc22a23
TU13709 other upstream 59382 3615482 ~ 3617043 (+) True G9154
XR_006252450.1 other upstream 936518 2729636 ~ 2739907 (+) False kdsr
XR_006252354.1 other upstream 986798 2675370 ~ 2689627 (+) False LOC122356587
TU13150 other upstream 1039839 2635241 ~ 2636586 (+) False G8768
TU13151 other upstream 1039839 2635241 ~ 2636586 (+) True G8768
TU14011 other downstream 543305 4222239 ~ 4223112 (+) True G9361
TU14081 other downstream 884963 4563897 ~ 4570094 (+) False G9416
XR_006247003.1 other downstream 900340 4579274 ~ 4588478 (+) True mylk4a
TU14280 other downstream 1219464 4898398 ~ 4899286 (+) False LOC122361055
TU14284 other downstream 1230195 4909129 ~ 4909798 (+) False LOC122355892

Expression Profile