RNA id: TU13796


Basic Information

Item Value
RNA id TU13796
length 3340
lncRNA type sense_over
GC content 0.39
exon number 1
gene id LOC122355245
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 3756171 ~ 3790339 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AATGACAATGGCGGGGAAAGAGTTAAATATAACTGATAGCGGACTATGACACCTAGAGCTGACTCCAGGAACTCAACAGTAATTTTAGACGAGCACTCACAACAATGACTGGACAAAtcaatttgcaaaaaaagcCCCAGTGTTCTGTAATAAAAGCATCTGGGTCTACAGTTCAGTCCACACCATCTGAATCACACTTGGCATCACTCTCCAGGGTcctcatttataaaactctTCATAGATTTCATCCTAAAAGTGTACCTACCCTCAAAAGCTAGATTTTACATACGCACTCAGTTTTTCAGATTCATAAAACCGAAAAAGAACGAAAATCTCTTTATAAATCCCAGTTAGGGGAAGACTGTACGTATGTGAATCTCCACCTGACTCCTCCCACAAATTACCATATATGGAGCTTACAACGCCTTGTTTTACTATGCATAACCTCATTTGCATATACTACCATGCATATTCATGTACACGTGACCCTATATTTAACATTGTCAAAGGTACAAGACATTAAGGAAATATGATACATGGACTCTATTCCTATTGTACcatacattcattttcattgctaAAAATCATCCAATATCCTTGTTatgtattacaataaatataagcaGATAATAACAATACCTGTTTAAATAGTTTCCAAGTAAATAGAATTGATCTCATTCTTTCACTGgccaaataatatttcagttcaaATCCCCAGCTGTACTTTTCATAGTGTTTTAGACATGCCTTCACATGAACaaacatgtactgtatatcaGCTTTAAAACAGAGCTTAAAATCCTTGTTTTTacatcattcattcatatcaCTCCAGGAAAAAGACTTTGTATGCATGGGTCAGAGTTTGCGTGCAGGTGCATGAATTTTCCTgtcaagtttgtttttataaatctcACTTTTTGCGTGGGAAGTGCAAAAAAGTGCTCTTTTAAATCTGGTTTTGAGCATATGCAACagttataaatgaggcccctaATCTCTACATCAGCAGCACATATGTTCTCCTCTGCTACCAGTCTAAACTTTGTCCAGTGCAGCATATCAACTGGTCATCAAACTGCCTCACACACAGCTAATGGAACAGCTCTGCTCAGCCAGACGACTCAAATGGAGCCCCGATACAGCTTTCTTCATCTACAACCAAAGCAGCTGTATCTCACTCTGAATAGCATTCTTTCAACCAGTGCTTCATGGAAAAGCTAGACAAACTATCTGAAGCTGATGTTTGTGTATTGAAGTCATTATGTTACATGATACTCCATCAGTGATCCTAAAGTGTTTAATTATGTTAAAGGGATCGTTCCTATGGGATAGATCATTGGGTGCACTAGAAAAAACTGCTGCTTTGAATTCAGTCTCATGAATATGCAGTCGTGCACCAGAGGGAAGTAGCTGAAGTCAAGATTATTACAAATCTGTTACGAAACCTATtgatttggggttttttttactttgcatcTACAGTGTGTGGTCATACGGGAACATTCTGTGATATTTTGGCAccttttttaaagcttgaatGTGGTTGCTGTTCACTGCCATTATCTGGACGAGTTCAAGCAGGACATTTTACTTGTCCAGAATCAGACTTCACTACCAAATCAAAACTGCCGAGCTGGACCACCCAACATTGTCCTGTGGCCCCAAGCATGACTCTCTGCAGGTGAGCCACCAGAAGTAAAACGCACTGGGAACGCCACTGTGTGACTGTGTTCGGAAGCACGTGTACAATCAGTACAACAGTGAAGTGAGACGTCACAAGTGAGGTGACATGAGGAACTAAGAAACATAAAGGCACACCCAGGACATGTAGCGTCTTGTTCCCTTGGGGAATCCTGGTTATATACGTAACCCAGGGGCATTCGCTTGGGACCCTGGAGTAGATACCAGGTTGTACAAGTAGATAAATGTGTGCGGATACCATGTTAGACCATTCCCAATGAGAAGGCCATGGAGGCTGCCATACTCCAGGGTGAGTGTACTTTGACACCCTTAGGTGATGGGAGGCAAGAGGACTTGCAATCTAATATCTAGGAagcctttgttttatttacttttaggAAGAATATCTTGTTTCATGGCTGGCTAGTCAGTGTTCAACTTGGCTACAGCATGAGTCACGACCTCCACAAGCTCCTAATTTGCGTTGGACTACGACAAGtcaatagccttttcagtgtcgATGTTCATCACATCAGCCTACTCAGATGAAGCGTCTAGGAAGAAATCGTAGAGCGGTCTTCGGATCCCTAAAATGGAGATATGGACCTAGAGGGTAAGGACGAGCCTGTCTTGGATCCCTCCACTAACGTGCTTTAACGAGGGCACCTTTATGCTTCGTGGTTGCTCACATCACCTCGCTGTTGACATCTTGCTTCTCTTTGGACTTATTTCACACATACTTCAGCCCGCGATCATGCAGAGGCATTCCCAAAGCATTTCAATGCAGCTGTAATTCTTGAAGGGGAACTTTAGTTAGTAGGTTTGCTGCActcttgaatattttttcccccattgGGAGATAAGGGCTGTGGTTCTTATTAGTCTTAAAGCTTTTGAAATTGCTTTGTAATGCTTCCCACACTGATGAATTTCATTCAACTTTCTCAATATTTCTGGAGtttgatattttgcattataatataatatatatgattatataagaCACAGTATATAAGGTTTTACTGCTTCTAGACTGGCTTATTTGCATGAAACTTGGTACCTATCACCTGTAAAGCCTCGTGACAAAACGTTAGCAAAGAATTTGAATACATCAAAGATACCCGAAGATATAAGGAAATTAAATGGTCGGGCATCACTTACTTTTACAGGCATTcaaaagcaaagtccaaacttAACAATACTTGATACGATAATGACATCGACTGAACACACTTGTAACACcgcaaaattaaatgtaaagtgtaaaaTTGAATTTCTTTGTGGTTGTGTAACCCTCAAGTAACCAAGACTACAagtaatttgttaaaaatcactttgaCAACTCAACAAACATGGCCGCCAGCAGCCAATCAAGTTTTAGCAGATAGGAATGACAAATCAGAATGCTGACCATTATGAAAATGGACATATTTACTAGAAAAACACTTGTCACTTTTAAAGAAACTCCTTTTAGGCCATTCACGAGATCTTTACCAAGCTTTGTACACGTCAACTAAAGATTATACAGTTTCTGGAATATCACTCATTTATATCATTGGGAATGATggataaagtacatttttggcTCTCAAAGATCAAAATCggtataaataatttaatacatttttcatgaatgaacaaacaccggttttagcat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13804 lncRNA upstream 1705 3784917 ~ 3785295 (+) True G9235
TU13803 lncRNA upstream 2333 3784339 ~ 3784667 (+) True G9234
TU13801 lncRNA upstream 6222 3780540 ~ 3780778 (+) True G9232
TU13693 lncRNA upstream 213925 3572437 ~ 3573075 (+) True G9142
TU13692 lncRNA upstream 222761 3563708 ~ 3564239 (+) True G9141
TU13810 lncRNA downstream 95743 3886082 ~ 3916483 (+) True G9241
TU13901 lncRNA downstream 222767 4013106 ~ 4021316 (+) True G9302
TU13906 lncRNA downstream 225111 4015450 ~ 4019284 (+) False G9304
TU13907 lncRNA downstream 225111 4015450 ~ 4060976 (+) True G9304
TU13909 lncRNA downstream 229000 4019339 ~ 4019715 (+) True G9305
XM_043264309.1 mRNA upstream 122608 3658015 ~ 3664392 (+) True usp14
XM_043264326.1 mRNA upstream 196868 3585341 ~ 3590132 (+) True LOC122362766
XM_043264332.1 mRNA upstream 196868 3585341 ~ 3590132 (+) False LOC122362766
XM_043261096.1 mRNA upstream 202960 3575656 ~ 3584040 (+) True serbp1b
XM_043253673.1 mRNA upstream 224493 3550235 ~ 3562507 (+) False zyg11l
XM_043254140.1 mRNA downstream 22974 3813313 ~ 3875726 (+) True pth1r
XM_043258723.1 mRNA downstream 160944 3951283 ~ 3991543 (+) True slc22a23
XM_043260111.1 mRNA downstream 203052 3993391 ~ 3997726 (+) True tubb2
XM_043217015.1 mRNA downstream 263685 4054024 ~ 4148291 (+) False LOC122323258
XM_043217007.1 mRNA downstream 263686 4054025 ~ 4148291 (+) False LOC122323258
TU13731 other upstream 108066 3676425 ~ 3678934 (+) True G9173
TU13709 other upstream 169957 3615482 ~ 3617043 (+) True G9154
XR_006252450.1 other upstream 1047093 2729636 ~ 2739907 (+) False kdsr
XR_006252354.1 other upstream 1097373 2675370 ~ 2689627 (+) False LOC122356587
TU13151 other upstream 1150414 2635241 ~ 2636586 (+) True G8768
TU14011 other downstream 431900 4222239 ~ 4223112 (+) True G9361
TU14081 other downstream 773558 4563897 ~ 4570094 (+) False G9416
XR_006247003.1 other downstream 788935 4579274 ~ 4588478 (+) True mylk4a
TU14280 other downstream 1108059 4898398 ~ 4899286 (+) False LOC122361055
TU14284 other downstream 1118790 4909129 ~ 4909798 (+) False LOC122355892

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU799738 True 5189 lncRNA 0.38 2 CI01180000 2121269 ~ 2127987 (+)
rainbow trout (Oncorhynchus mykiss) TU799738 True 325 lncRNA 0.43 2 NC_048572.1 37494356 ~ 37500703 (+)